genome.fa.s9088.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009088.1 Hibiscus syriacus cultivar Beakdansim tig00112532_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  200037

Tables:   1   2   

This is table  2  of  2  ( 174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
138145--138191	20	2.4	19	82	10	67	19	17	10	53	1.72
145700--145744	23	2.0	23	90	0	72	24	26	26	22	2.00
145712--146027	151	2.1	149	94	2	555	34	21	16	27	1.95
147492--147536	21	2.1	21	87	0	63	15	24	28	31	1.96
163275--163649	191	2.0	192	90	2	592	38	8	13	39	1.76
163849--163908	25	2.4	25	91	5	95	55	5	8	31	1.51
163874--164384	268	1.9	270	85	5	703	41	8	16	33	1.79
164394--164458	34	1.9	34	96	0	121	49	1	3	46	1.27
164394--164447	17	3.2	17	69	10	56	53	0	3	42	1.18
167267--167545	27	9.7	27	71	14	175	38	3	15	42	1.65
167234--167429	90	2.2	90	92	1	322	37	4	15	42	1.66
167274--167545	117	2.3	116	94	1	465	38	4	15	41	1.66
169500--169556	28	2.2	24	78	21	78	45	14	3	36	1.61
171838--171912	23	3.2	23	84	3	105	16	12	17	54	1.70
172625--172676	20	2.6	20	96	0	95	38	26	13	21	1.90
172666--172764	21	4.8	20	72	6	72	36	23	19	21	1.95
172731--172924	20	9.6	20	81	5	221	35	25	19	19	1.95
172731--172924	60	3.2	60	83	0	253	35	25	19	19	1.95
173306--173376	33	2.2	33	92	0	115	11	22	18	47	1.80
173497--173551	14	3.6	14	73	21	56	40	23	27	9	1.85
173497--173567	33	2.2	33	92	0	115	42	25	23	8	1.82
173563--173660	19	5.7	19	70	22	81	10	24	22	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
173585--173674	14	5.7	14	74	23	81	8	25	23	42	1.83
173568--173682	33	3.5	33	95	0	212	9	24	20	45	1.81
175381--175853	185	2.5	186	99	0	939	21	12	19	46	1.83
175381--175853	93	5.1	93	99	0	939	21	12	19	46	1.83
175897--176025	19	7.3	19	75	17	125	45	28	17	8	1.77
175933--176025	33	2.8	32	91	4	150	46	27	18	7	1.76
175897--176025	52	2.5	52	74	14	140	45	28	17	8	1.77
176021--176155	19	7.6	19	75	16	128	11	19	23	45	1.82
176043--176099	14	3.7	14	77	20	60	10	21	22	45	1.82
176026--176118	33	2.8	33	95	0	168	10	20	21	47	1.80
178059--178094	14	2.6	14	95	0	63	33	0	22	44	1.53
178201--178302	19	5.6	19	84	13	151	44	17	23	14	1.86
178331--178635	19	17.4	19	79	16	340	14	20	18	46	1.83
178299--178635	141	2.4	135	88	8	484	14	20	18	46	1.84
178331--178603	52	5.2	51	89	7	306	14	20	17	46	1.83
180940--180964	12	2.1	12	100	0	50	0	28	0	72	0.86
181139--181185	24	2.0	24	87	8	69	38	21	14	25	1.92
181859--182227	20	18.5	20	86	4	458	20	18	26	34	1.96
182506--182536	16	1.9	16	100	0	62	35	6	6	51	1.53
182727--182784	30	1.9	30	89	0	89	36	15	6	41	1.74
183720--183873	38	4.0	38	77	8	123	27	29	20	22	1.98
183738--183873	58	2.3	58	93	0	227	26	28	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
183720--183873	20	8.0	20	77	7	149	27	29	20	22	1.98
188464--188687	64	3.5	62	81	6	234	33	20	19	26	1.96
189339--189493	31	5.0	31	93	3	260	19	19	23	38	1.94
189339--189493	61	2.5	62	92	3	260	19	19	23	38	1.94
192656--192879	64	3.5	64	79	4	213	33	19	18	27	1.96
193533--193688	31	5.0	31	84	4	199	21	16	21	41	1.91
195727--195760	16	2.1	16	89	10	52	26	35	20	17	1.95
195743--195878	20	7.0	20	76	8	120	28	27	19	24	1.98
195726--195817	38	2.5	38	80	7	109	26	30	20	22	1.98
195743--195878	58	2.3	58	91	0	209	28	27	19	24	1.98

Tables:   1   2

The End!