genome.fa.s909.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000909.1 Hibiscus syriacus cultivar Beakdansim tig00001807_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71751

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4834--4863	13	2.3	13	94	0	51	53	3	10	33	1.51
5683--5742	28	2.1	28	87	6	86	63	1	0	35	1.05
5682--5745	29	2.3	27	84	10	83	64	1	0	34	1.03
16334--16375	14	2.9	14	85	7	57	11	33	0	54	1.37
18408--18436	6	5.0	6	95	4	51	68	0	13	17	1.20
23273--23318	19	2.3	20	85	3	58	30	15	4	50	1.63
35396--35452	27	2.0	29	83	12	75	33	0	3	63	1.12
35447--35476	2	15.0	2	100	0	60	50	0	0	50	1.00
35485--35536	7	7.4	7	85	6	70	34	0	1	63	1.06
35467--35536	29	2.4	28	86	11	97	35	0	1	62	1.04
44422--44480	31	1.9	31	92	0	100	28	8	18	44	1.79
45866--45910	21	2.1	21	91	0	72	37	2	0	60	1.09
45936--45984	21	2.3	21	92	0	80	61	2	14	22	1.43
47644--47690	20	2.4	19	82	10	67	53	10	17	19	1.72
47432--47903	180	2.6	180	89	1	676	42	14	16	27	1.86
48284--48416	58	2.3	58	98	0	257	43	3	18	35	1.65
50157--50221	21	3.1	21	93	0	103	41	10	30	16	1.83
50255--50320	33	2.0	33	90	0	105	28	0	48	22	1.51
52096--52144	19	2.6	19	96	0	89	32	2	10	55	1.45
52378--53920	200	7.8	200	90	5	2435	35	14	18	30	1.91
53421--53791	179	2.1	179	95	0	670	34	15	19	30	1.93
56774--57016	120	2.0	120	95	0	441	32	13	16	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56675--57484	303	2.7	303	97	0	1530	33	14	16	35	1.90
57073--57319	120	2.1	120	94	0	431	32	13	15	38	1.87
60793--60857	23	2.8	23	88	0	103	38	20	6	35	1.77
60883--60943	22	2.8	22	77	2	70	32	11	9	45	1.73
61318--61390	23	3.2	23	92	0	119	34	5	21	38	1.77
61814--61878	23	2.8	23	85	0	94	35	4	18	41	1.71
61806--61883	23	3.5	22	82	3	86	35	3	19	41	1.70
62233--62277	22	2.0	22	82	0	54	40	8	11	40	1.72
62295--62367	23	3.2	23	92	0	119	34	5	21	38	1.77
60905--71751	489	22.4	490	94	2	19159	40	7	11	40	1.70
62779--62845	23	3.0	23	84	2	91	35	5	20	37	1.78
63263--63335	23	3.2	23	92	0	119	34	5	21	38	1.77
63755--63827	23	3.2	23	88	0	110	32	5	23	38	1.78
64244--64316	23	3.2	23	92	0	119	34	5	21	38	1.77
64735--64806	23	3.2	23	80	4	92	36	5	20	37	1.76
65233--65297	23	2.8	23	88	0	103	35	4	20	40	1.73
65225--65302	23	3.5	22	84	3	95	35	3	20	39	1.71
65651--65695	22	2.0	22	82	0	54	40	8	11	40	1.72
65710--65782	23	3.2	23	92	0	119	34	5	21	38	1.77
66199--66271	23	3.2	23	80	0	92	36	5	20	36	1.76
66687--66759	23	3.2	23	92	0	119	34	5	21	38	1.77
60905--71751	977	11.2	980	95	2	19240	40	7	11	40	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67177--67249	23	3.2	23	88	0	110	32	5	23	38	1.78
67664--67735	23	3.2	23	92	2	110	34	4	22	38	1.73
68146--68216	23	3.2	23	88	8	110	33	5	22	38	1.78
68151--68221	21	3.3	21	90	4	97	33	5	22	38	1.78
68624--68696	23	3.2	23	80	0	92	36	5	20	36	1.76
69113--69185	23	3.2	23	92	0	119	34	5	21	38	1.77
69601--69677	23	3.5	22	87	7	111	32	5	23	38	1.77
70076--70147	23	3.2	23	90	2	110	34	5	20	38	1.76
71028--71104	23	3.5	22	84	7	102	32	6	22	38	1.79
71514--71585	20	3.5	22	81	16	91	33	5	22	38	1.77
71514--71589	19	3.7	21	80	18	81	34	5	22	38	1.77

Tables:   1

The End!