genome.fa.s9090.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009090.1 Hibiscus syriacus cultivar Beakdansim tig00112536_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  415979

Tables:   1   2   

This is table  1  of  2  ( 162 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379--445	29	2.3	29	86	0	89	22	8	28	40	1.84
2901--3049	27	5.4	28	80	7	153	20	16	16	46	1.84
4234--4264	2	15.5	2	93	0	53	51	3	0	45	1.17
8023--8092	22	3.2	22	91	0	122	31	18	27	22	1.97
16081--16123	21	2.0	21	81	0	50	27	27	25	18	1.98
16151--16188	20	1.9	20	88	0	58	23	34	31	10	1.89
17219--17314	31	3.1	30	71	12	79	27	19	20	32	1.97
17297--17429	30	4.4	30	96	0	239	24	19	24	32	1.98
20760--20802	21	2.0	21	81	0	50	27	27	25	18	1.98
20830--20867	20	1.9	20	88	0	58	23	34	31	10	1.89
21435--21498	14	5.0	13	73	19	55	59	1	18	20	1.46
21439--21506	20	3.6	19	76	11	77	57	1	19	22	1.49
21898--21993	31	3.1	30	71	12	79	27	19	20	32	1.97
21976--22108	30	4.4	30	96	0	239	24	20	23	31	1.98
23984--24052	29	2.4	29	95	0	120	40	24	8	26	1.84
26018--26062	21	2.1	21	87	0	63	31	28	24	15	1.96
27874--27936	23	2.7	23	90	0	90	19	26	26	26	1.99
31611--31662	22	2.3	23	70	12	54	28	0	3	67	1.08
31999--32078	41	2.0	41	92	0	133	41	8	7	42	1.64
36079--36120	20	2.2	20	91	4	68	33	26	4	35	1.77
40404--40448	21	2.1	21	87	0	63	31	28	24	15	1.96
42255--42317	23	2.7	23	90	0	90	19	26	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45991--46042	22	2.3	23	70	12	54	28	0	3	67	1.08
46381--46460	41	2.0	41	92	0	133	41	8	7	42	1.64
50440--50480	19	2.2	19	95	0	73	34	26	4	34	1.78
56517--56566	23	2.2	23	92	0	82	20	28	24	28	1.99
60156--60198	19	2.2	20	83	4	52	30	0	2	67	1.03
60526--60605	41	2.0	41	92	0	133	41	8	7	42	1.64
64581--64607	12	2.2	12	100	0	54	29	33	0	37	1.58
66814--66858	20	2.2	20	88	0	63	20	20	17	42	1.90
67222--67270	20	2.3	22	86	6	66	36	20	10	32	1.86
67341--67378	20	1.9	20	84	10	51	44	18	15	21	1.86
67408--67451	21	2.0	21	86	4	61	31	2	11	54	1.48
72080--72149	31	2.3	31	87	0	95	24	12	12	50	1.76
72289--72357	31	2.2	31	89	0	102	24	13	11	50	1.74
72309--72379	31	2.3	30	83	13	83	29	12	11	46	1.77
72706--72782	31	2.5	31	87	4	93	49	14	12	23	1.78
78066--78142	30	2.5	31	77	10	88	46	5	5	42	1.48
79208--79236	2	14.5	2	100	0	58	48	0	0	51	1.00
79250--79285	16	2.1	18	90	10	58	52	2	2	41	1.30
79455--79503	25	1.9	26	87	4	73	40	10	0	48	1.37
89423--89469	21	2.2	21	92	0	76	65	10	8	14	1.45
90367--90391	12	2.1	12	100	0	50	52	0	0	48	1.00
90429--90468	17	2.4	16	80	12	53	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93487--93652	91	1.8	91	84	2	226	37	10	17	33	1.85
107515--107549	18	2.1	16	89	10	52	28	11	0	60	1.32
107673--107722	17	3.2	16	78	13	59	52	0	0	48	1.00
107661--107722	31	2.0	30	84	9	81	46	0	0	53	1.00
107673--107722	16	3.2	16	74	23	52	52	0	0	48	1.00
107690--107722	18	1.9	17	88	11	50	48	0	0	51	1.00
108987--109030	2	22.0	2	100	0	88	50	0	0	50	1.00
109369--109567	21	10.2	19	71	11	91	20	19	22	38	1.94
109444--109567	40	3.1	40	90	0	203	18	20	25	36	1.95
112577--112679	29	3.6	29	96	1	181	19	21	14	44	1.86
112695--112730	12	3.0	12	91	0	63	36	25	5	33	1.79
113038--113214	64	2.8	64	85	1	230	25	20	22	32	1.98
113038--113262	64	3.5	64	82	3	204	26	20	21	31	1.98
114492--114908	160	2.6	161	81	3	462	28	24	18	28	1.98
114470--114908	55	8.1	55	79	6	389	29	24	18	27	1.98
114497--114895	215	1.9	211	81	4	487	28	25	17	28	1.97
114917--114990	37	2.0	38	94	2	132	25	21	17	35	1.95
116277--116419	48	2.8	50	78	19	145	8	17	0	74	1.06
116268--116349	41	2.0	40	84	13	105	8	13	0	78	0.97
116268--116393	10	13.1	10	68	21	58	9	15	0	75	1.04
116361--116435	28	2.8	28	78	11	84	6	18	0	74	1.03
116295--116382	7	12.6	7	69	21	60	11	14	0	73	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116398--116437	13	3.0	14	85	10	57	5	17	0	77	0.94
116277--116427	18	8.7	17	74	13	130	7	17	0	74	1.04
126094--126131	16	2.4	16	100	0	76	28	21	15	34	1.94
129540--129621	44	1.9	41	85	7	110	32	28	6	32	1.82
129531--129616	19	4.2	19	73	16	73	30	26	5	37	1.80
130653--130723	37	1.9	37	91	0	115	32	19	2	45	1.65
137877--137930	10	5.7	9	80	10	63	14	25	29	29	1.95
137877--137930	19	2.8	18	81	10	63	14	25	29	29	1.95
152039--152066	3	9.3	3	100	0	56	32	0	0	67	0.91
162404--162505	31	3.2	32	81	4	100	40	1	3	53	1.30
162429--162500	32	2.3	31	85	7	92	41	2	1	54	1.23
167343--172496	4	1302.5	4	97	2	9787	49	0	24	25	1.51
179171--179228	27	2.1	27	87	9	82	58	1	0	39	1.08
181625--181668	21	2.1	21	83	8	54	45	2	0	52	1.13
184529--184808	54	5.1	54	79	14	186	26	26	17	30	1.97
184616--184974	54	6.6	54	89	1	463	22	25	18	33	1.96
184619--184972	109	3.3	106	86	7	455	22	25	18	33	1.97
184616--184974	163	2.2	163	87	4	494	22	25	18	33	1.96
185351--185474	37	3.4	37	88	2	169	25	18	22	33	1.96
186682--186930	125	2.0	125	83	0	309	26	24	15	33	1.95
190250--190388	72	1.9	72	94	0	242	24	27	12	35	1.92
191483--191570	46	1.9	46	95	0	158	40	22	10	26	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
198460--198547	23	3.9	23	78	15	94	30	26	19	23	1.98
198720--198770	21	2.4	21	93	0	84	27	21	11	39	1.88
199162--199290	54	2.4	54	86	2	168	27	22	18	31	1.97
199269--199323	20	2.7	21	80	5	69	29	29	12	29	1.93
199270--199348	39	2.0	40	85	2	106	31	27	12	27	1.93
199371--199424	21	2.6	21	100	0	108	27	14	24	33	1.94
201700--201768	23	3.0	23	84	0	93	27	26	24	21	1.99
201784--201996	103	2.1	103	94	0	372	36	23	13	27	1.92
203388--203548	64	2.5	65	85	7	195	33	18	21	26	1.96
204040--204074	18	1.9	18	88	11	54	54	5	17	22	1.64
204956--205270	149	2.1	149	96	1	578	26	17	21	34	1.95
205238--205282	23	2.0	23	90	0	72	22	26	26	24	2.00
206683--206742	20	2.9	21	90	7	95	18	26	25	30	1.98
207633--207675	17	2.6	16	78	7	50	44	20	0	34	1.52
210370--210439	23	3.0	24	77	4	72	25	24	24	25	2.00
210455--210672	103	2.1	103	93	0	364	36	22	13	27	1.92
212769--212948	64	2.8	61	78	12	175	27	15	27	29	1.96
212895--212945	19	2.7	19	85	8	70	25	15	35	23	1.94
212959--212998	21	1.9	21	94	0	71	22	15	30	32	1.94
215539--215618	24	3.5	23	75	14	85	27	23	25	23	2.00
215516--215638	44	2.8	41	74	12	120	26	21	26	26	1.99
221354--221402	19	2.7	17	84	9	53	26	18	30	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
221354--221531	63	2.8	64	81	8	204	27	16	28	28	1.97
221479--221517	19	2.1	19	95	0	69	25	15	38	20	1.92
221373--221561	63	3.0	63	82	5	177	28	15	25	30	1.96
239618--239670	2	26.5	2	96	0	97	49	0	0	50	1.00
240030--240092	23	2.6	24	78	19	60	50	1	0	47	1.10
240064--240110	22	2.1	23	88	4	69	44	2	0	53	1.12
240058--240137	32	2.5	32	80	14	92	47	2	0	50	1.14
243628--243665	19	2.0	19	89	0	58	28	13	26	31	1.93
244807--245030	64	3.5	64	85	2	263	33	20	19	27	1.96
245377--245450	29	2.6	29	95	2	132	43	16	20	20	1.88

Tables:   1   2