Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009090.1 Hibiscus syriacus cultivar Beakdansim tig00112536_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  415979

Tables:   1   2   

This is table  2  of  2  ( 162 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
245535--245597
15
4.2
15
93
0
108
14
22
33
30
1.93
246708--246794
29
2.9
31
77
14
94
26
19
20
33
1.97
249864--249910
11
4.0
13
81
13
50
59
0
6
34
1.23
250053--250091
16
2.4
16
82
0
51
33
48
12
5
1.63
251259--251284
2
13.0
2
100
0
52
50
0
0
50
1.00
260261--260300
6
6.7
6
85
0
53
2
37
2
57
1.26
260266--260335
24
2.9
24
82
0
77
5
40
7
47
1.55
266665--267082
116
3.6
116
91
1
635
35
16
23
25
1.95
267852--267932
29
2.8
29
96
3
146
17
22
16
44
1.86
268262--268333
36
2.0
36
100
0
144
25
22
22
30
1.99
268262--268320
19
3.2
19
68
18
61
22
23
23
30
1.99
268309--268428
64
1.9
63
81
8
145
26
16
20
35
1.94
269270--269425
44
3.5
44
88
0
222
28
23
19
29
1.98
269262--269425
88
1.9
88
88
0
247
27
23
18
29
1.98
270451--270881
43
10.0
43
75
9
342
24
16
6
52
1.67
270472--270800
88
3.8
87
79
7
341
23
16
6
53
1.65
270471--270881
131
3.2
128
79
9
390
24
16
6
52
1.67
271048--271104
17
2.8
22
72
27
70
3
14
50
31
1.59
271054--271098
17
2.6
17
96
3
81
4
13
48
33
1.62
271135--271200
2
34.5
2
91
8
111
50
0
0
50
1.00
286845--286881
18
2.1
18
89
0
56
21
18
29
29
1.97
286841--286900
21
3.0
21
78
11
72
21
21
26
30
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
294626--294686
23
2.7
23
84
2
70
21
32
26
19
1.97
304349--304388
20
2.0
20
100
0
80
25
15
35
25
1.94
315615--315655
22
1.9
21
85
5
55
21
2
4
70
1.18
329228--329278
18
2.8
18
100
0
102
27
35
21
15
1.94
330055--330097
21
2.0
22
86
4
61
34
27
13
23
1.93
331304--331377
21
3.5
21
96
0
130
22
44
0
32
1.53
333031--333070
21
1.9
21
89
0
62
30
25
17
27
1.97
343152--343449
149
2.0
149
100
0
596
44
14
11
30
1.80
345982--346484
251
2.0
251
99
0
990
42
17
14
26
1.87
347981--348029
22
2.3
22
82
3
64
44
0
6
48
1.27
350289--350342
18
3.0
18
97
0
99
22
31
27
18
1.97
353299--353343
22
2.1
22
83
4
56
33
8
26
31
1.87
355437--355550
61
1.9
60
92
5
194
35
13
15
35
1.87
377874--377930
25
2.3
23
83
16
71
33
8
33
24
1.86
381518--381592
36
2.1
36
97
0
141
13
17
24
45
1.84
385673--385891
75
2.9
75
92
0
348
39
18
27
14
1.89
387251--387291
20
2.1
20
86
4
57
7
9
9
73
1.26
389139--389209
21
3.4
21
90
0
97
25
38
26
9
1.87
389923--389975
2
26.5
2
96
0
97
50
0
0
49
1.00
396714--396750
12
3.2
12
88
11
51
62
0
0
37
0.96

Tables:   1   2

The End!