genome.fa.s9093.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009093.1 Hibiscus syriacus cultivar Beakdansim tig00112540_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  447474

Tables:   1   2   

This is table  1  of  2  ( 197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5417--5446	15	2.1	15	93	6	53	40	0	0	60	0.97
8812--8885	32	2.3	32	76	4	78	21	8	29	40	1.82
10593--10663	23	3.1	23	85	0	97	23	21	25	29	1.99
11817--11856	18	2.3	17	87	12	55	45	12	0	42	1.42
15277--15356	31	2.5	32	97	2	153	62	6	13	17	1.51
23555--23584	15	2.0	15	100	0	60	13	46	26	13	1.80
28519--28548	15	2.0	15	100	0	60	13	46	26	13	1.80
33480--33509	15	2.0	15	100	0	60	13	46	26	13	1.80
38046--38074	14	2.1	14	100	0	58	79	0	13	6	0.93
38076--38141	21	3.1	21	73	14	64	72	1	21	4	1.10
38234--38309	38	2.0	38	97	0	143	18	14	7	59	1.59
40485--40510	2	13.0	2	100	0	52	50	0	0	50	1.00
41067--41110	2	22.0	2	100	0	88	50	0	0	50	1.00
41354--41423	24	2.9	24	78	0	77	45	17	11	25	1.81
42121--42184	29	2.2	29	82	0	83	39	21	6	32	1.79
42218--42246	12	2.3	13	94	5	51	17	24	41	17	1.90
42226--42286	17	3.5	17	86	4	95	9	19	49	21	1.77
42290--42325	11	3.6	10	89	10	56	33	30	22	13	1.93
43203--43236	17	2.0	17	100	0	68	35	23	0	41	1.55
47751--47789	2	19.5	2	89	10	62	48	0	2	48	1.15
48012--48063	13	4.0	13	82	0	68	34	13	23	28	1.92
48058--48118	28	2.2	28	90	0	95	31	16	16	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54116--54409	141	2.1	142	88	1	437	40	14	13	31	1.85
54568--54613	22	2.1	21	84	15	58	63	6	2	28	1.31
56179--56212	13	2.5	13	85	4	50	44	0	0	55	0.99
56176--56252	34	2.3	32	80	13	75	41	0	0	58	0.98
56188--56244	23	2.5	22	75	11	60	45	0	0	54	0.99
57394--57429	17	2.1	17	90	10	56	41	0	5	52	1.24
57994--58096	42	2.5	40	79	9	109	23	33	19	24	1.97
62967--63029	24	2.8	23	77	15	62	77	4	11	6	1.10
65951--65980	2	15.0	2	100	0	60	0	50	0	50	1.00
66352--66389	18	2.2	18	85	4	51	31	7	2	57	1.41
70641--70688	9	5.3	9	79	0	51	10	31	22	35	1.88
71027--71084	18	3.2	18	90	0	98	22	20	29	27	1.99
72483--72508	13	2.0	13	100	0	52	46	23	0	30	1.53
82148--82480	111	3.0	111	98	0	630	45	11	7	35	1.69
82542--82577	17	2.1	18	94	5	65	63	2	5	27	1.30
82623--82663	10	4.1	10	87	12	66	41	0	29	29	1.56
82782--82907	50	2.5	50	89	0	198	21	29	34	15	1.94
91123--91413	4	72.8	4	100	0	582	24	0	25	50	1.50
96718--96800	29	2.8	30	80	5	80	33	14	4	46	1.66
102520--102694	36	4.9	36	93	0	278	43	16	15	25	1.86
106228--106286	28	2.1	28	84	6	75	22	11	8	57	1.61
114547--114572	9	2.9	9	100	0	52	19	0	0	80	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119903--119955	21	2.5	21	90	0	79	43	26	11	18	1.84
126664--126719	20	2.7	22	75	13	64	32	17	16	33	1.92
126869--126920	20	2.6	20	93	0	86	46	15	15	23	1.83
126882--126933	20	2.5	20	90	3	77	44	17	13	25	1.85
127934--127969	17	2.1	17	94	0	63	41	5	13	38	1.68
128458--128518	29	2.1	30	84	3	79	40	4	18	36	1.72
134421--134445	12	2.1	12	100	0	50	28	16	32	24	1.96
136339--136391	21	2.5	21	93	0	88	20	30	15	33	1.93
136381--136438	23	2.7	21	74	10	71	27	17	17	37	1.92
137473--137501	15	1.9	15	100	0	58	34	6	31	27	1.83
138636--138662	12	2.2	12	100	0	54	51	7	0	40	1.30
138771--138816	19	2.5	19	86	6	60	39	2	8	50	1.46
140694--140718	2	12.5	2	100	0	50	52	0	0	48	1.00
140940--140998	28	2.1	28	100	0	118	40	10	15	33	1.81
146440--146551	27	4.1	28	86	5	140	63	0	20	15	1.36
151095--151137	21	2.0	21	86	0	59	27	18	23	30	1.98
156281--156309	10	2.9	10	100	0	58	20	10	20	48	1.79
160091--160155	13	5.0	13	82	0	67	30	20	15	33	1.93
160091--160155	26	2.5	26	87	0	85	30	20	15	33	1.93
160138--160292	85	1.8	84	87	4	231	31	20	18	29	1.97
160144--160292	44	3.5	44	63	9	108	32	20	18	28	1.97
166554--166691	2	70.5	2	92	4	237	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
166764--166821	29	2.0	30	96	3	109	20	36	12	31	1.89
167283--167344	29	2.1	31	87	6	92	20	11	12	54	1.68
167843--167883	20	2.0	20	85	0	55	29	31	14	24	1.95
168976--169518	285	1.9	286	89	1	849	34	13	23	28	1.93
172417--172521	39	2.8	38	80	12	126	46	0	2	50	1.16
172595--172666	26	2.8	25	72	16	65	44	0	1	54	1.08
172779--172849	30	2.5	27	77	8	79	53	2	0	43	1.15
176124--176167	2	22.0	2	95	0	79	47	0	0	52	1.00
179862--179960	38	2.6	38	86	0	126	28	12	18	41	1.86
188804--188862	18	3.3	18	71	21	61	59	16	8	15	1.60
190089--190135	21	2.3	20	75	7	51	48	0	2	48	1.13
190097--190161	29	2.2	29	77	0	76	50	1	3	44	1.26
190288--190333	24	1.9	24	86	8	67	41	0	6	52	1.27
190847--190890	23	2.0	22	86	4	61	54	6	6	31	1.53
191565--191621	29	2.0	29	86	6	80	50	0	1	47	1.11
191677--191718	20	2.2	19	86	4	57	64	2	0	33	1.07
191826--191863	20	1.9	19	89	5	58	50	0	0	50	1.00
193230--193295	3	21.7	3	84	9	89	62	0	1	36	1.05
193443--193789	76	4.6	76	94	0	613	34	21	20	24	1.97
193782--194194	185	2.2	186	98	0	801	38	15	15	30	1.88
194135--194422	76	3.8	76	94	0	504	34	22	19	24	1.96
195096--195150	22	2.5	22	90	0	92	40	16	10	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
199833--199878	15	3.1	14	82	11	56	4	15	0	80	0.86
205745--205786	20	2.2	19	86	4	57	64	2	0	33	1.07
205658--205888	120	1.9	120	83	5	299	45	8	7	38	1.64
205929--205966	20	1.9	19	89	5	58	50	0	0	50	1.00
207364--207442	3	26.7	3	78	7	54	54	0	2	43	1.14
207369--207442	22	3.4	21	80	9	69	55	0	1	43	1.08
212528--212557	15	2.1	14	93	6	51	33	0	0	66	0.92
213482--213590	21	5.0	21	73	16	82	30	26	17	25	1.97
213733--213773	21	2.0	21	90	0	64	29	29	12	29	1.93
220380--220480	21	4.7	21	75	14	100	30	26	18	23	1.98
220374--220462	45	2.0	45	85	8	121	29	24	17	28	1.98
220614--220662	21	2.3	21	89	6	73	30	26	8	34	1.86
221042--221093	19	2.5	22	81	9	65	25	32	17	25	1.97
221153--221242	42	2.1	42	85	0	117	36	28	7	26	1.84
222758--222823	32	2.1	32	94	0	114	51	9	4	34	1.54
229114--229175	2	31.0	2	93	6	108	48	0	1	50	1.10
230141--230200	31	1.9	32	83	16	81	36	18	15	30	1.91
232257--232318	25	2.5	25	94	0	106	45	4	9	40	1.58
232228--232353	63	2.0	63	84	7	168	46	3	8	40	1.53
232282--232379	38	2.6	38	83	4	110	46	3	8	41	1.49
232453--232486	16	2.1	16	88	0	50	26	0	0	73	0.83
233181--233301	55	2.2	55	87	0	179	30	26	14	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
239153--239230	23	3.7	21	80	8	86	28	20	17	33	1.96
239570--239614	18	2.4	18	85	3	54	66	8	0	24	1.20
239677--239715	13	2.9	13	88	3	51	38	10	7	43	1.67
241156--241198	19	2.3	19	84	8	52	23	0	18	58	1.40
241772--241916	55	2.6	55	89	2	211	28	26	13	31	1.93
243463--243527	31	2.1	31	85	5	87	21	18	23	36	1.95
246224--246428	65	3.2	64	79	10	220	31	22	18	28	1.97
248686--248750	31	2.1	31	88	5	96	20	20	24	35	1.96
249411--249483	21	3.5	21	84	0	101	28	23	23	24	1.99
250768--250824	16	3.4	18	73	24	54	19	3	0	77	0.92

Tables:   1   2