genome.fa.s9093.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009093.1 Hibiscus syriacus cultivar Beakdansim tig00112540_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  447474

Tables:   1   2   

This is table  2  of  2  ( 197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
251521--251645	46	2.7	46	100	0	250	30	19	16	33	1.94
257418--257474	24	2.6	21	74	15	60	29	22	19	28	1.98
257418--257541	45	2.8	42	79	13	133	28	24	21	25	1.99
260203--260362	65	2.5	64	88	5	234	30	22	16	30	1.96
262686--262719	16	2.1	16	94	0	59	58	2	2	35	1.28
266694--266747	20	2.7	20	88	0	72	40	1	24	33	1.66
266874--266912	21	2.0	21	85	10	55	33	5	0	61	1.18
268965--269003	20	1.9	20	89	5	60	35	2	2	58	1.25
277009--277046	2	19.0	2	100	0	76	50	0	0	50	1.00
277146--277214	23	3.0	23	76	0	75	23	26	23	27	2.00
277306--277333	14	2.0	14	100	0	56	35	7	21	35	1.81
308673--308711	18	2.2	18	95	0	69	23	41	20	15	1.90
311032--311063	2	16.0	2	93	0	55	46	0	0	53	1.00
311326--311355	14	2.1	15	93	6	53	33	6	3	56	1.42
311726--311764	19	2.1	18	85	9	51	35	7	30	25	1.84
320471--320589	60	2.0	60	86	0	166	28	27	13	30	1.94
320585--320615	6	5.2	6	100	0	62	32	35	16	16	1.91
325277--325712	218	2.0	218	100	0	872	23	26	20	29	1.99
334721--334852	43	3.0	45	88	6	193	32	25	17	24	1.97
334844--334905	25	2.5	25	100	0	124	19	32	16	32	1.94
334843--334914	8	8.8	8	75	17	67	20	31	15	31	1.94
337255--337296	22	1.9	22	100	0	84	26	9	26	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
338605--338675	36	2.0	36	88	0	106	42	19	9	28	1.83
339259--339294	15	2.6	13	91	8	54	13	19	11	55	1.68
339255--339342	21	4.2	21	70	12	74	15	19	11	53	1.72
342903--343081	64	2.8	64	93	1	288	24	25	18	31	1.97
343935--343974	20	2.1	19	90	4	62	15	22	0	62	1.32
345837--345864	2	14.0	2	100	0	56	50	0	0	50	1.00
346853--346989	64	2.2	63	80	4	141	24	22	19	33	1.97
351553--351697	54	2.7	54	84	0	191	39	15	20	24	1.91
352069--352167	22	4.5	22	96	0	171	33	16	12	38	1.85
352884--353089	36	5.7	36	74	4	189	31	17	12	38	1.87
352881--353107	73	3.1	73	90	1	348	33	17	11	37	1.87
353122--353811	122	5.7	122	85	5	827	39	15	18	25	1.90
354248--354302	25	2.2	25	90	0	83	56	12	14	16	1.68
354999--355023	2	12.5	2	100	0	50	48	0	0	52	1.00
355284--355337	23	2.5	22	82	14	67	55	1	0	42	1.10
355632--355664	16	1.9	18	88	11	52	42	12	0	45	1.41
360150--360734	55	10.7	55	88	1	836	28	28	15	27	1.96
361733--361783	15	3.3	15	75	13	50	9	17	0	72	1.11
387770--387816	16	2.7	18	77	12	62	34	19	17	29	1.94
389941--390003	27	2.3	27	83	5	83	41	0	0	58	0.98
389933--389990	3	19.7	3	82	10	75	36	0	0	63	0.94
392023--392104	24	3.6	24	71	17	59	29	6	2	62	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
399069--399100	9	3.6	9	91	0	55	21	21	0	56	1.43
402623--402689	25	2.7	25	81	9	75	77	0	11	10	0.99
402648--402694	15	2.9	16	84	9	51	78	0	12	8	0.95
403022--403096	20	3.8	19	79	12	80	30	9	4	56	1.50
404247--404677	113	3.8	113	84	3	561	37	15	19	28	1.92
405027--405072	3	15.7	3	86	13	69	32	0	0	67	0.91
405918--405951	17	2.0	17	88	0	50	44	2	0	52	1.16
408480--408590	3	37.0	3	100	0	222	33	0	33	33	1.58
408589--408621	3	11.0	3	93	0	57	36	0	0	63	0.95
409368--409410	2	21.5	2	100	0	86	51	0	0	48	1.00
414621--414673	22	2.4	22	96	0	97	41	22	26	9	1.84
429414--429497	29	2.9	29	87	0	105	16	27	30	25	1.97
429598--429686	29	3.1	29	81	0	97	24	39	20	15	1.91
429994--430040	14	3.5	13	77	11	51	57	0	40	2	1.11
430138--430178	22	1.9	21	85	5	55	26	0	19	53	1.45
430480--430514	8	4.4	8	96	0	61	22	0	14	62	1.31
432734--432782	14	3.7	14	81	15	68	48	14	0	36	1.44
432725--432791	25	3.0	22	80	16	75	47	13	1	37	1.52
432733--432802	21	3.1	22	82	12	72	50	10	0	40	1.36
432802--432828	10	2.7	10	100	0	54	40	18	0	40	1.51
432812--433141	49	6.6	49	88	10	499	46	11	0	41	1.40
432812--433534	109	6.6	109	81	13	857	46	12	0	41	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
432871--433478	146	3.9	145	79	18	655	46	11	0	41	1.40
432749--433312	60	9.2	60	77	13	515	46	11	0	41	1.40
433186--433410	49	4.3	49	90	6	315	46	12	0	41	1.41
432921--433534	278	2.3	277	93	3	1072	46	12	0	41	1.41
433394--433534	21	7.0	21	66	20	68	45	13	0	41	1.43
433345--433534	60	3.2	60	93	0	328	45	12	0	41	1.42
436968--437061	43	2.2	43	84	5	127	48	8	2	40	1.45
437027--437084	28	2.1	28	100	0	116	56	13	0	29	1.38
437600--437711	29	3.9	29	90	0	143	15	25	37	22	1.93
437833--437929	29	3.3	29	94	0	167	27	32	25	13	1.93
438108--438135	5	5.6	5	100	0	56	42	39	0	17	1.50

Tables:   1   2

The End!