genome.fa.s9110.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009110.1 Hibiscus syriacus cultivar Beakdansim tig00112584_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  291768

Tables:   1   2   

This is table  1  of  2  ( 153 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1929--1987	21	2.8	21	89	0	91	18	20	28	32	1.96
4247--4274	2	14.0	2	100	0	56	50	0	0	50	1.00
6864--6893	15	2.0	15	93	0	51	56	30	0	13	1.37
30454--30559	52	2.0	53	87	5	153	39	12	20	27	1.88
31050--31081	16	2.0	16	93	0	55	40	0	18	40	1.51
38174--38208	18	1.9	18	88	0	52	54	0	17	28	1.43
39306--39392	24	3.7	23	84	3	93	19	14	18	47	1.83
39309--39393	12	7.3	11	72	17	64	18	15	17	48	1.82
39330--39401	24	3.0	24	83	2	92	19	12	16	51	1.76
42908--42942	18	1.9	18	88	0	52	54	0	17	28	1.43
44063--44131	12	5.8	12	78	10	61	17	14	18	49	1.80
44026--44135	24	4.6	24	79	6	109	20	14	16	48	1.81
57233--57338	52	2.0	53	87	5	153	38	11	21	28	1.88
57829--57860	16	2.0	16	93	0	55	40	0	18	40	1.51
62746--62837	12	7.8	12	73	16	66	18	15	18	47	1.82
62732--62839	47	2.3	48	81	12	125	19	15	17	47	1.83
62732--62841	24	4.6	24	77	8	102	20	15	17	47	1.83
84595--84633	20	2.0	20	100	0	78	53	25	10	10	1.66
84932--85254	159	2.0	162	97	2	616	31	21	16	30	1.95
96649--96690	14	3.1	14	93	3	68	11	14	14	59	1.61
96953--97003	10	4.8	10	79	13	57	11	9	17	60	1.57
96953--96996	23	1.9	23	90	0	70	13	9	15	61	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96965--97020	24	2.4	23	76	11	60	12	12	16	58	1.62
97028--97053	10	2.6	10	100	0	52	50	19	19	11	1.77
97954--98013	24	2.5	25	89	8	97	21	31	28	18	1.97
103687--103737	26	2.0	24	92	7	84	64	13	3	17	1.42
111039--111080	2	21.0	2	100	0	84	50	0	0	50	1.00
111086--111119	17	2.0	17	88	11	52	64	0	5	29	1.17
111125--111157	16	2.1	16	88	11	50	60	0	0	39	0.97
112423--112487	10	7.0	9	86	13	80	67	0	0	32	0.91
112423--112487	3	21.0	3	82	17	80	67	0	0	32	0.91
113766--113813	23	2.1	23	88	0	69	35	12	18	33	1.89
114540--114576	18	2.1	18	89	0	56	51	10	5	32	1.60
114780--114844	23	2.8	23	90	0	94	38	18	7	35	1.80
115196--115249	23	2.5	20	75	18	54	42	18	1	37	1.61
115211--115273	23	2.7	23	90	0	90	38	19	6	36	1.77
115642--115703	23	2.7	23	87	2	81	38	19	6	35	1.77
114782--117942	429	7.4	431	98	1	6187	38	13	8	39	1.74
116056--116109	23	2.5	20	75	18	54	42	18	1	37	1.61
116071--116133	23	2.7	23	90	0	90	38	19	6	36	1.77
116483--116536	23	2.5	20	75	18	54	42	18	1	37	1.61
116498--116560	23	2.7	23	90	0	90	38	19	6	36	1.77
116913--116966	23	2.5	20	75	18	54	42	18	1	37	1.61
116928--116990	23	2.7	23	90	0	90	38	19	6	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117306--117342	19	1.9	19	88	0	56	45	10	16	27	1.80
117341--117394	23	2.5	20	75	18	54	42	18	1	37	1.61
117356--117418	23	2.7	23	90	0	90	38	19	6	36	1.77
117767--117820	23	2.5	20	75	18	54	42	18	1	37	1.61
117782--117844	23	2.7	23	90	0	90	38	19	6	36	1.77
120550--120623	20	3.7	20	94	3	123	52	18	18	9	1.72
120658--120848	20	9.4	20	86	3	247	36	17	25	21	1.95
120637--120835	83	2.4	83	81	6	226	35	17	24	22	1.95
120636--120850	103	2.1	103	94	0	376	35	17	25	21	1.95
120637--120850	40	5.2	40	84	5	239	35	17	25	21	1.95
120543--120870	40	8.0	40	75	11	135	39	18	23	18	1.92
120841--120879	20	2.0	20	89	0	60	51	17	17	12	1.76
120888--120965	6	13.5	6	93	6	135	32	51	16	0	1.45
121666--121698	6	5.5	6	100	0	66	0	15	51	33	1.43
121776--121819	20	2.2	20	91	0	70	11	18	15	54	1.70
121806--122164	20	17.6	20	80	6	202	18	23	20	37	1.94
121808--122039	40	5.7	40	84	4	293	20	25	18	36	1.94
121808--122040	83	2.8	83	88	1	337	20	24	18	36	1.95
122029--122081	21	2.5	21	100	0	106	16	24	33	24	1.96
122114--122164	19	2.6	20	90	3	77	15	17	23	43	1.88
122247--123072	184	4.5	184	96	1	1529	33	15	14	35	1.89
124531--124614	6	14.0	6	80	0	78	23	34	5	35	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124532--124614	15	5.7	15	81	8	91	22	34	6	36	1.79
124535--124618	27	3.1	27	84	0	114	22	34	7	35	1.82
126078--127476	196	7.1	198	95	2	2478	32	15	15	37	1.88
127566--127600	18	1.9	18	94	0	61	51	11	2	34	1.53
129381--129446	33	2.0	33	87	0	96	24	45	1	28	1.62
131539--131591	24	2.2	24	83	6	63	26	7	13	52	1.66
131736--131782	20	2.4	19	79	10	58	19	17	8	55	1.67
131904--131949	20	2.3	20	89	10	76	17	17	10	54	1.70
133729--133861	34	3.9	34	87	6	164	35	1	1	61	1.14
133843--133876	17	2.0	17	88	11	52	23	0	0	76	0.79
133749--133872	22	5.3	24	66	16	66	33	1	0	64	1.09
139057--139097	15	2.5	17	88	7	59	51	0	2	46	1.14
139385--139733	176	2.0	176	81	2	414	31	18	13	36	1.89
146873--146937	18	3.5	19	75	21	66	52	29	13	4	1.61
146880--146941	19	3.3	19	75	20	76	51	30	14	3	1.58
147110--147257	73	2.0	74	85	6	203	41	10	8	38	1.71
156113--156150	16	2.4	16	100	0	76	57	5	15	21	1.57
161923--162311	190	2.0	193	95	2	712	33	21	12	32	1.91
165682--165713	15	2.3	15	89	10	50	53	3	3	40	1.33
166370--166434	22	3.2	20	74	21	64	72	0	1	26	0.94
166782--166837	26	2.2	26	90	0	85	5	32	3	58	1.37
166791--166848	26	2.2	26	78	0	62	8	29	8	53	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
167904--168738	84	10.1	84	79	6	873	25	20	24	29	1.99
167904--168747	249	3.4	247	90	1	1280	24	20	25	29	1.99
172757--172827	31	2.2	33	80	14	85	70	0	4	25	1.05
172780--172826	16	3.0	15	76	17	51	74	0	2	23	0.93
172780--172844	21	3.2	21	71	25	59	72	0	1	26	0.94
173198--173253	26	2.2	26	93	0	94	7	30	3	58	1.42
173207--173264	26	2.2	26	84	0	71	10	27	8	53	1.64
182807--182849	16	2.5	18	77	11	54	23	27	9	39	1.85
192591--192663	37	2.0	37	84	7	96	54	1	1	42	1.17
200153--200197	18	2.4	19	79	13	58	71	2	4	22	1.15
200305--200329	13	1.9	13	100	0	50	80	4	0	16	0.87
200287--200347	22	2.8	22	80	5	61	75	1	1	21	0.98
200358--200442	33	2.5	35	77	12	88	65	4	2	27	1.24
200495--200519	12	2.1	12	100	0	50	68	0	8	24	1.16
201055--201151	37	2.6	37	88	0	140	36	9	13	41	1.76
201910--203078	106	11.0	106	92	0	1820	22	18	25	34	1.96
204034--204088	22	2.5	22	96	0	101	25	10	27	36	1.89
204694--204774	16	5.3	14	79	20	67	1	12	8	77	1.04
204704--204774	31	2.3	29	84	13	90	0	12	8	78	0.95
204704--204759	14	3.8	14	82	17	69	0	10	7	82	0.85
209559--209698	73	1.9	75	81	14	173	61	1	7	30	1.31
209634--209659	13	2.0	13	100	0	52	76	0	0	23	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
209652--209706	21	2.6	21	81	16	53	61	0	3	34	1.13
209652--209725	24	3.0	25	79	13	75	64	0	4	31	1.12
209735--209782	23	2.0	24	84	11	64	70	0	2	27	0.98
211695--211762	3	21.7	3	88	8	100	64	0	1	33	1.02
215127--215248	35	3.4	36	86	6	167	33	4	18	43	1.71
215649--215687	16	2.4	16	91	4	60	33	7	23	35	1.83
215649--215682	16	2.1	17	94	5	61	35	5	23	35	1.79
219760--219825	21	3.5	21	67	26	65	28	4	19	46	1.69
219753--219870	35	3.3	37	87	8	163	32	3	19	44	1.67
230486--230550	16	4.1	16	80	4	69	50	20	13	15	1.77

Tables:   1   2