genome.fa.s9110.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009110.1 Hibiscus syriacus cultivar Beakdansim tig00112584_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  291768

Tables:   1   2   

This is table  2  of  2  ( 153 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
232135--232190	7	7.9	7	77	18	62	69	1	0	28	0.98
232734--232800	33	2.0	32	91	5	107	25	11	23	38	1.89
232854--232900	3	15.7	3	83	16	62	68	0	0	31	0.90
233940--234016	24	3.6	22	75	20	67	29	19	25	24	1.98
235554--235636	23	3.6	23	88	0	121	19	26	25	28	1.98
237168--237262	15	6.3	15	100	0	190	27	33	25	13	1.93
237871--237939	34	2.0	35	88	8	106	21	30	28	18	1.97
244626--244693	34	2.0	34	94	5	120	20	30	30	17	1.96
244626--244686	19	3.4	18	70	25	58	22	29	32	14	1.94
244639--244695	19	3.3	18	70	25	59	17	36	28	17	1.93
245505--245833	83	4.0	83	84	2	426	24	19	24	31	1.98
245529--245833	166	1.8	167	90	0	495	25	18	24	31	1.97
245926--246077	37	4.3	37	75	18	153	38	13	21	27	1.90
246012--246079	21	3.5	21	71	24	76	41	11	22	25	1.87
246640--246837	110	1.8	110	92	0	333	20	18	25	35	1.95
251046--251114	3	21.3	3	83	16	61	72	0	0	27	0.85
251041--251114	10	7.8	10	78	21	88	71	0	1	27	0.94
251041--251112	18	3.9	18	91	8	110	72	0	1	26	0.93
251049--251112	4	17.2	4	79	20	61	73	0	0	26	0.84
251032--251109	37	2.1	38	88	7	115	74	0	2	23	0.94
251652--251720	33	2.1	33	89	5	104	27	11	20	40	1.87
251769--251800	14	2.4	14	94	5	57	78	0	0	21	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
251769--251818	17	3.1	17	86	11	61	74	0	0	26	0.83
252484--252531	3	16.0	3	100	0	96	33	33	0	33	1.58
253070--253094	11	2.3	11	100	0	50	40	52	8	0	1.31
255217--255555	167	2.0	170	81	6	404	42	19	12	25	1.86
273543--273662	38	3.2	38	72	11	129	45	4	3	46	1.38
273537--273683	76	2.0	73	94	4	258	50	3	2	43	1.33
277065--277568	263	1.9	260	90	2	796	39	13	13	33	1.83
277452--277718	137	1.9	137	94	1	473	35	16	10	37	1.83
277729--277832	55	1.9	55	86	7	149	33	23	4	38	1.76
278011--278147	60	2.3	60	82	5	161	42	8	21	27	1.82
283382--283453	36	2.0	36	100	0	144	27	19	22	30	1.98

Tables:   1   2

The End!