genome.fa.s9117.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009117.1 Hibiscus syriacus cultivar Beakdansim tig00112604_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  576650

Tables:   1   2   3   

This is table  3  of  3  ( 277 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
508695--508726	8	4.0	8	91	0	55	12	25	15	46	1.81
511708--511747	21	1.9	21	89	0	62	32	25	22	20	1.98
511719--511759	21	2.0	21	85	0	55	34	21	21	21	1.97
511831--511953	64	1.9	65	85	5	169	30	17	18	33	1.94
511941--511995	19	2.9	19	100	0	110	25	16	36	21	1.94
511833--511975	65	2.2	64	82	3	162	30	17	20	30	1.96
512805--512912	45	2.4	46	82	4	148	30	19	19	30	1.96
515508--515588	23	3.6	22	75	14	85	27	22	23	27	1.99
515511--515607	44	2.2	44	83	10	119	27	19	23	28	1.98
521259--521418	65	2.5	65	87	3	216	28	18	23	30	1.97
525098--525191	39	2.5	37	81	8	100	39	17	0	43	1.49
525137--525212	34	2.1	37	83	9	95	39	9	0	51	1.34
528484--528651	38	4.4	38	87	2	221	23	19	27	28	1.98
531099--531147	19	2.6	19	96	3	91	57	22	8	12	1.61
539982--540036	3	18.0	3	88	3	83	61	0	0	38	0.96
540271--540685	113	3.7	113	91	1	615	29	18	15	37	1.91
541554--542422	83	10.7	83	93	3	1403	38	21	11	27	1.88
543564--543632	13	5.2	12	78	16	66	0	20	0	79	0.73
543575--543632	15	3.7	16	82	15	68	0	20	0	79	0.74
543564--543624	19	3.2	19	80	17	72	0	19	0	80	0.72
543564--543632	27	2.5	26	86	11	86	0	20	0	79	0.73
543571--543632	23	2.7	23	82	9	81	0	19	0	80	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
543565--543629	33	2.0	33	85	11	89	0	18	0	81	0.69
554252--554302	19	2.7	19	84	3	59	60	1	1	35	1.19
556390--556438	3	16.0	3	82	4	62	59	0	0	40	0.98
558722--558770	20	2.3	23	79	10	59	79	2	8	10	1.01
559035--559077	21	2.1	20	83	12	52	72	2	6	18	1.19
561099--561125	14	1.9	14	100	0	54	22	18	22	37	1.95
560893--561293	200	2.0	200	94	0	694	26	17	17	38	1.92
572395--572460	13	5.2	12	81	13	71	53	1	1	43	1.19
572418--572462	2	24.5	2	82	17	62	53	0	0	46	1.00
572398--572463	17	3.7	18	82	11	75	53	1	1	43	1.19
572418--572469	13	3.9	12	81	16	50	51	1	0	46	1.12
572550--572621	23	3.3	22	75	23	71	69	0	5	25	1.10
576149--576179	3	10.3	3	92	0	53	64	0	3	32	1.09
576513--576650	13	11.0	13	82	7	169	23	18	17	40	1.91
576518--576650	36	3.6	37	89	4	196	24	18	16	39	1.91

Tables:   1   2   3

The End!