genome.fa.s9118.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009118.1 Hibiscus syriacus cultivar Beakdansim tig00112605_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  353132

Tables:   1   2   

This is table  2  of  2  ( 220 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
192374--192713	108	3.1	108	85	2	452	32	17	16	33	1.93
192374--192713	162	2.1	162	87	3	488	32	17	16	33	1.93
192767--192798	15	2.1	15	100	0	64	50	18	6	25	1.70
193043--193113	20	3.5	19	70	19	54	29	26	15	28	1.96
199222--199559	54	6.3	54	86	2	464	31	17	17	32	1.94
199222--199559	162	2.1	162	90	0	532	31	17	17	32	1.94
199900--199953	22	2.7	19	88	8	72	33	16	14	35	1.90
199880--199953	20	3.7	19	79	12	67	32	21	13	32	1.92
201624--201649	2	13.0	2	100	0	52	50	0	0	50	1.00
202157--202299	23	6.3	23	79	14	140	23	18	25	32	1.97
206049--206099	23	2.2	24	92	3	86	33	23	21	21	1.97
206079--206113	18	1.9	18	100	0	70	28	34	22	14	1.93
210319--210488	90	1.9	90	91	0	277	44	7	11	37	1.68
214322--214381	29	2.0	30	93	6	104	33	6	15	45	1.72
214461--214580	21	5.7	21	78	9	129	24	36	17	21	1.94
214601--214674	20	3.7	20	71	7	60	22	27	20	29	1.98
214788--214834	20	2.2	22	88	11	71	34	40	8	17	1.79
217839--217907	30	2.2	30	82	15	86	36	5	15	42	1.72
217848--217907	29	2.0	30	90	6	95	35	6	15	43	1.72
217991--218044	21	2.6	21	81	0	72	24	40	12	22	1.89
218029--218071	22	1.9	23	86	13	63	25	30	20	23	1.99
218106--218239	20	6.7	20	82	5	162	20	29	19	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
218352--218391	20	1.9	22	90	10	66	37	40	10	12	1.77
222265--222297	18	1.9	17	88	11	50	21	21	9	48	1.77
222443--222487	2	22.5	2	100	0	90	51	0	0	48	1.00
222481--222585	50	2.1	51	92	1	176	35	16	3	44	1.65
226791--226887	46	2.2	44	87	12	137	22	19	26	30	1.98
226792--226887	23	4.3	22	87	9	117	22	19	27	30	1.98
230789--230827	20	2.0	20	85	10	53	35	12	25	25	1.92
234954--235039	30	2.9	29	71	11	77	43	2	16	38	1.61
237070--237383	157	2.0	157	99	0	619	33	7	18	40	1.79
239846--239896	24	2.1	24	100	0	102	27	15	29	27	1.96
240083--240159	36	2.1	36	97	0	145	29	7	25	36	1.84
244431--244562	67	2.0	67	89	0	201	30	25	13	31	1.94
244766--244807	18	2.2	19	83	8	50	7	16	2	73	1.15
257919--257950	12	2.7	12	95	0	55	65	3	0	31	1.08
258142--258389	131	1.9	132	82	5	313	23	16	32	26	1.96
258551--258708	66	2.5	64	77	4	167	43	14	12	30	1.82
264042--264077	16	2.3	16	90	4	56	61	0	5	33	1.19
265731--265755	13	1.9	13	100	0	50	0	36	0	64	0.94
266321--266353	12	2.8	12	95	0	57	66	3	0	30	1.06
267798--267857	23	2.6	23	81	0	84	33	25	21	20	1.97
282277--282307	3	10.3	3	100	0	62	67	0	0	32	0.91
298324--298383	9	6.3	9	79	11	66	15	26	30	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
298323--298381	19	3.1	19	87	2	82	16	23	30	28	1.97
298371--298404	14	2.4	14	95	0	59	14	47	26	11	1.79
298380--298430	17	2.9	17	88	5	75	17	45	23	13	1.84
298421--298458	7	5.4	7	87	0	58	18	26	26	28	1.98
305566--305621	9	5.9	9	79	10	58	14	25	30	30	1.95
305582--305618	19	1.9	19	100	0	74	10	27	35	27	1.90
305609--305642	14	2.4	14	95	0	59	14	47	26	11	1.79
305632--305673	22	1.9	22	95	0	75	19	45	23	11	1.83
305664--305701	7	5.4	7	87	0	58	18	26	26	28	1.98
308412--308451	18	2.2	18	100	0	80	32	7	17	42	1.77
308567--308608	20	2.1	20	90	0	66	33	16	23	26	1.96
316645--316695	20	2.5	20	96	0	93	41	21	21	15	1.90
316684--316798	20	5.7	20	83	6	133	32	27	18	21	1.97
316682--316818	41	3.4	41	81	6	170	34	26	18	21	1.96
317134--317191	20	2.9	20	94	0	98	37	25	20	15	1.92
317210--317274	19	3.7	19	86	13	95	13	21	18	46	1.84
317414--317450	14	2.6	14	86	0	56	48	21	0	29	1.50
319241--319308	20	3.5	19	82	6	82	38	23	23	14	1.92
319297--319387	14	5.9	14	72	20	74	49	21	17	10	1.77
319281--319392	33	3.4	33	95	1	199	48	21	18	11	1.80
319281--319403	65	1.9	66	89	5	196	47	22	17	11	1.80
319399--319495	19	5.6	19	69	22	88	13	19	20	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
319421--319479	14	3.9	14	74	20	55	11	16	22	49	1.78
319404--319495	33	2.8	33	96	0	166	13	18	20	47	1.81
319480--319534	20	2.8	19	83	8	65	16	23	23	36	1.94
320016--320060	18	2.5	18	88	0	72	13	15	44	26	1.83
321379--321437	20	3.0	20	87	0	73	42	22	18	16	1.89
321700--321743	22	2.0	22	95	0	79	18	15	45	20	1.85
321952--322068	61	1.9	61	89	0	180	23	17	23	34	1.96
321931--322065	20	6.7	20	83	5	146	25	18	25	31	1.98
321952--322086	61	2.2	61	84	2	173	22	20	23	33	1.97
322136--322176	21	2.0	21	85	0	55	34	29	17	19	1.94
322769--322904	66	2.1	66	91	2	220	21	13	39	25	1.89
324176--324217	14	3.0	14	85	0	57	26	7	28	38	1.82
324791--324840	20	2.5	20	93	0	82	38	28	18	16	1.91
325238--325737	199	2.5	199	85	4	661	40	15	15	29	1.87
325819--325863	23	2.0	23	95	0	81	37	20	8	33	1.83
326830--326928	46	2.2	46	83	0	126	37	21	21	20	1.95
326868--326928	23	2.7	23	73	0	59	37	22	24	14	1.92
331158--331225	23	3.0	22	80	8	73	32	25	25	17	1.97
331125--331225	46	2.2	46	82	3	123	33	23	22	19	1.97
333463--333537	23	3.2	24	73	5	73	26	10	16	46	1.79
335543--335609	13	5.3	13	80	7	75	46	14	14	23	1.83
335545--335609	24	2.6	26	85	7	89	46	13	15	24	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
335952--335989	3	12.7	3	100	0	76	31	0	0	68	0.90
338663--338730	35	1.9	35	90	0	109	35	13	17	33	1.89
338886--338980	13	7.3	13	89	0	136	43	16	17	22	1.88
339315--339352	3	12.7	3	89	10	60	34	0	0	65	0.93
344861--344946	21	4.1	21	78	10	61	16	26	33	23	1.95
344888--344946	20	2.8	21	84	10	75	18	25	35	20	1.95
351039--351107	35	2.0	35	88	0	102	33	13	17	36	1.88
351206--351364	13	12.9	13	81	9	183	41	17	17	23	1.90
351206--351364	49	3.2	49	81	10	182	41	17	17	23	1.90
351696--351740	3	16.0	3	84	13	60	33	2	0	64	1.06
351688--351745	18	3.3	17	82	15	73	31	1	0	67	1.01
352472--352506	18	1.9	18	88	0	52	45	0	45	8	1.34

Tables:   1   2

The End!