Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009121.1 Hibiscus syriacus cultivar Beakdansim tig00112611_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  272059

Tables:   1   2   

This is table  2  of  2  ( 175 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
208015--208045
4
7.8
4
92
0
53
51
19
0
29
1.47
208007--208045
12
3.2
12
85
7
53
48
20
0
30
1.50
208043--208150
25
4.4
25
72
14
73
62
0
4
32
1.15
208043--208138
23
4.1
23
76
10
70
63
0
5
31
1.16
209467--209725
110
2.4
110
83
5
332
22
18
24
34
1.96
210458--210624
65
2.5
67
87
2
230
38
8
22
30
1.85
210573--210691
36
3.3
36
85
2
166
37
14
21
26
1.91
210585--210676
37
2.5
36
89
1
130
41
16
21
20
1.90
212280--212417
69
2.0
69
91
2
224
26
14
22
36
1.93
212488--212565
13
6.0
13
87
12
108
5
16
2
75
1.09
212488--212565
26
3.0
26
89
10
124
5
16
2
75
1.09
212495--212577
26
3.2
26
81
10
107
3
15
3
77
1.05
215748--215782
18
1.9
18
88
11
54
68
0
11
20
1.20
215895--215955
16
3.5
18
73
13
56
75
0
3
21
0.94
216068--216118
25
2.0
27
84
7
70
58
0
3
37
1.16
216068--216132
25
2.7
23
73
15
51
63
0
3
33
1.10
216101--216166
21
3.0
21
72
16
55
68
0
6
25
1.13
218865--218914
2
25.0
2
79
0
55
48
4
2
46
1.32
220859--220922
20
3.5
18
76
15
60
28
3
1
67
1.15
225210--225719
106
4.8
106
93
0
851
35
26
17
20
1.95
226017--226121
36
2.9
37
94
1
185
24
21
14
39
1.91
226131--226259
35
3.6
35
79
8
143
44
17
10
27
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
226131--226263
39
3.7
38
78
12
138
45
18
9
27
1.80
227774--227806
14
2.4
14
94
0
57
21
3
0
75
0.93
227774--227812
7
5.6
7
81
0
51
20
2
0
76
0.90
227860--227886
6
4.5
6
100
0
54
44
0
0
55
0.99
229776--229808
3
11.3
3
93
6
59
30
0
0
69
0.88
231421--231457
2
18.5
2
100
0
74
51
0
0
48
1.00
231808--231933
60
2.2
55
80
8
137
26
7
9
55
1.59
237239--237300
4
15.2
4
75
21
58
53
22
0
24
1.46
237587--237690
35
2.9
35
85
1
136
30
20
13
35
1.91
237657--237853
105
1.9
105
87
4
290
29
20
10
39
1.86
238175--238276
29
3.6
28
83
9
125
28
11
13
46
1.79
238232--238369
62
2.2
63
81
11
151
31
14
10
42
1.80
238486--238529
15
2.9
15
93
0
70
31
20
4
43
1.72
238952--239316
40
8.6
40
70
16
211
25
31
18
24
1.97
238952--239284
128
2.6
129
94
1
589
25
31
18
24
1.98
239467--239496
3
10.3
3
92
7
53
30
0
0
70
0.88
241110--241222
2
56.5
2
100
0
226
50
0
0
49
1.00
246534--246579
23
2.0
23
95
0
83
13
6
21
58
1.57
252339--252471
42
3.2
42
97
0
248
35
12
32
19
1.90
254577--254610
2
16.5
2
87
6
50
47
5
0
47
1.26
257878--257912
17
2.1
17
88
0
52
42
2
0
54
1.15
261647--261777
60
2.2
60
84
1
172
32
15
16
36
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
262000--262115
60
1.9
60
92
0
196
34
20
14
30
1.93
262001--262134
60
2.2
60
88
2
189
32
20
15
31
1.94
262643--262677
3
11.7
3
100
0
70
34
0
0
65
0.93
263963--263999
2
18.5
2
94
0
65
48
2
0
48
1.15
266081--266122
20
2.0
21
95
4
77
30
23
9
35
1.87
269813--270100
37
7.9
37
79
14
200
45
4
6
43
1.50
269841--270070
37
6.5
37
82
11
236
46
3
6
43
1.48
270097--270169
12
6.5
11
71
22
55
27
0
4
68
1.07
270123--270168
23
2.0
23
83
12
58
28
0
2
69
1.00
270129--270163
19
1.9
17
88
11
52
28
0
2
68
1.04
271581--271667
31
2.9
31
84
3
106
34
20
19
25
1.96

Tables:   1   2

The End!