Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009128.1 Hibiscus syriacus cultivar Beakdansim tig00112624_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62813

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2733--2797
33
2.0
32
82
8
78
32
32
1
33
1.67
5819--5874
25
2.3
25
81
6
62
58
14
14
12
1.63
8772--8822
20
2.6
20
90
3
77
35
15
5
43
1.71
9230--9269
19
2.1
19
85
4
53
20
12
0
67
1.22
13152--13220
33
2.1
33
83
5
86
33
1
34
30
1.67
13206--13302
13
8.0
12
72
22
62
28
3
37
30
1.73
13191--13303
36
3.2
36
91
1
165
28
3
35
32
1.74
14333--14374
22
1.9
22
85
0
57
42
21
0
35
1.53
22819--22883
16
4.1
16
76
9
53
0
13
6
80
0.90
22834--22868
14
2.5
14
85
0
52
0
14
0
85
0.59
22819--22870
16
3.2
16
82
15
54
0
15
1
82
0.75
22817--22871
11
5.0
11
84
8
67
0
16
1
81
0.77
22824--22870
17
2.8
17
84
12
53
0
14
2
82
0.75
23222--23290
33
2.1
33
83
5
86
31
1
36
30
1.67
23276--23372
13
8.0
12
72
22
62
28
3
37
30
1.73
23261--23373
36
3.2
36
92
1
174
27
3
36
32
1.74
24848--24889
19
2.2
20
91
4
68
38
14
4
42
1.66
24848--24898
20
2.6
19
90
3
75
37
13
3
45
1.63
28540--28592
21
2.6
21
90
3
81
33
13
7
45
1.71
32629--32680
21
2.6
21
90
6
81
32
13
7
46
1.72
35479--35530
22
2.3
23
93
3
88
28
5
32
32
1.81
39367--39412
19
2.2
22
88
11
71
0
13
6
80
0.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39617--39652
16
2.2
16
90
9
56
61
0
27
11
1.30
39786--39855
35
2.0
36
91
2
115
30
2
34
32
1.72
41533--41612
35
2.2
37
91
4
128
31
37
3
27
1.74
42040--42107
21
3.3
21
66
15
61
36
19
29
14
1.91
46051--46080
13
2.4
13
94
5
53
43
0
30
26
1.55

Tables:   1

The End!