genome.fa.s9129.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009129.1 Hibiscus syriacus cultivar Beakdansim tig00112626_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42615

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2071--2135	20	3.2	20	95	0	112	33	36	4	24	1.76
6142--6191	13	3.6	14	76	15	59	60	14	2	24	1.45
6691--6738	21	2.3	21	85	7	62	25	12	37	25	1.91
6683--6724	21	2.0	22	90	4	68	23	14	35	26	1.93
11411--11450	20	2.0	20	85	9	55	57	0	2	40	1.12
12403--12466	21	3.0	21	72	22	53	9	39	0	51	1.34
18258--18325	34	2.0	34	97	0	127	32	22	11	33	1.90
24219--24257	16	2.4	17	83	12	55	58	0	2	38	1.12
25827--25867	19	2.1	20	95	4	75	48	17	0	34	1.47
31366--31413	23	2.1	23	88	0	69	35	12	18	33	1.89
31807--31867	23	2.7	23	89	0	86	37	19	6	36	1.78
32225--32276	23	2.3	22	90	6	77	44	19	1	34	1.62
32235--32297	23	2.7	23	90	0	90	38	19	6	36	1.77
32655--32724	22	3.2	22	79	6	70	41	21	5	31	1.76
33081--33132	23	2.3	22	90	6	77	44	19	1	34	1.62
33091--33153	23	2.7	23	90	0	90	38	19	6	36	1.77
33468--33506	20	2.0	20	89	0	60	48	10	15	25	1.76
33519--33580	22	2.7	23	85	5	81	38	19	6	35	1.77
33931--33981	22	2.3	23	89	3	77	45	17	1	35	1.60
33931--34002	23	3.2	22	82	4	81	40	19	5	34	1.75
31525--35307	424	8.9	431	97	1	7285	39	12	8	39	1.74
34354--34405	23	2.3	22	90	6	77	44	19	1	34	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34364--34426	23	2.7	23	90	0	90	38	19	6	36	1.77
31525--35307	849	4.4	860	97	1	7252	39	12	8	39	1.74
34780--34851	23	3.2	23	84	2	83	38	20	5	34	1.76
35208--35259	23	2.3	22	90	6	77	44	19	1	34	1.62
35218--35280	23	2.7	23	90	0	90	38	19	6	36	1.77
36158--37315	199	5.9	198	96	2	2088	30	16	15	37	1.90
36158--37315	397	2.9	395	96	2	2095	30	16	15	37	1.90
37431--37478	19	2.6	19	93	3	80	56	10	2	31	1.45
39374--39422	21	2.3	22	79	10	57	18	26	16	38	1.91
41622--41663	19	2.3	18	88	11	68	19	16	11	52	1.74

Tables:   1

The End!