genome.fa.s9132.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009132.1 Hibiscus syriacus cultivar Beakdansim tig00112630_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  608087

Tables:   1   2   

This is table  1  of  2  ( 228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
560--1103	104	5.2	108	82	13	589	27	13	13	45	1.80
1346--1591	72	3.4	72	79	9	277	34	13	10	40	1.80
1920--1958	11	3.5	11	93	6	69	82	0	0	17	0.68
1921--1958	12	3.2	12	92	7	69	84	0	0	15	0.63
7781--7819	19	2.1	19	95	0	69	51	10	10	28	1.68
19837--19886	14	3.4	14	75	24	57	6	14	28	52	1.65
20883--20934	16	3.2	16	83	0	68	40	3	25	30	1.73
21518--21673	28	5.4	28	82	9	190	46	30	8	14	1.76
21519--21711	28	6.4	31	83	7	172	43	31	9	15	1.78
25543--25616	6	12.3	6	88	0	85	16	47	1	35	1.55
25540--25616	21	3.8	21	89	5	106	16	46	1	35	1.56
25540--25613	18	4.1	18	83	0	94	17	45	1	35	1.57
29945--30429	158	3.1	156	77	6	471	29	19	4	46	1.70
30020--30420	159	2.5	158	82	4	461	29	18	4	46	1.69
30538--30587	20	2.5	21	80	6	59	36	0	8	56	1.29
56146--56193	15	3.2	15	87	0	69	10	16	64	8	1.48
59830--59913	29	2.8	31	78	7	91	35	13	19	32	1.90
62655--62684	14	2.1	14	100	0	60	26	13	6	53	1.64
70449--70479	15	2.0	16	93	6	55	32	0	0	67	0.91
70445--70483	16	2.4	17	82	4	53	35	0	0	64	0.94
71461--71496	2	18.0	2	100	0	72	50	0	0	50	1.00
71579--71624	14	3.2	14	77	17	58	54	2	15	28	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71573--71688	32	3.7	31	85	5	146	51	6	14	26	1.67
74692--74723	12	2.8	11	90	9	55	12	6	46	34	1.67
74741--74771	2	15.5	2	100	0	62	48	0	0	51	1.00
76208--76317	20	5.6	20	93	1	186	22	23	5	48	1.71
78629--78769	60	2.4	59	81	3	158	36	2	23	36	1.70
79086--79120	17	2.1	17	88	0	52	60	0	0	40	0.97
79190--79216	14	1.9	14	100	0	54	44	7	3	44	1.49
85101--85137	19	2.0	18	94	5	65	45	5	5	43	1.49
116976--117020	20	2.5	18	80	19	58	24	24	11	40	1.87
116989--117026	20	1.9	20	100	0	76	23	28	10	36	1.88
123301--123428	62	2.1	62	84	0	166	32	14	7	46	1.71
128057--128222	84	2.0	84	83	3	210	26	13	10	49	1.74
128883--128912	2	15.0	2	100	0	60	50	0	0	50	1.00
130886--130924	16	2.4	16	95	0	69	38	33	7	20	1.81
135531--135589	29	2.0	29	100	0	118	44	15	20	20	1.87
142300--142329	15	2.0	15	93	0	51	43	6	0	50	1.28
152899--152995	51	1.9	51	80	4	115	41	3	1	54	1.23
153592--153640	15	3.1	16	82	11	66	53	28	10	8	1.63
157543--157628	44	2.0	44	93	4	147	48	4	2	44	1.36
157547--157624	19	3.8	19	70	18	57	50	2	2	44	1.29
158115--158168	10	5.6	10	72	16	51	51	1	0	46	1.11
158115--158168	19	2.8	19	72	10	56	51	1	0	46	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
159091--159137	13	3.5	13	77	5	58	82	4	0	12	0.80
160928--160989	29	2.2	28	79	2	70	30	11	14	43	1.80
164147--164177	2	15.5	2	100	0	62	51	0	0	48	1.00
164585--164615	16	1.9	16	93	0	53	51	19	3	25	1.62
167790--167843	21	2.4	24	74	20	62	57	1	3	37	1.27
170386--170440	2	27.5	2	100	0	110	50	0	0	49	1.00
180677--180752	21	3.5	21	77	10	82	55	1	2	40	1.22
184766--184790	2	12.5	2	100	0	50	48	0	0	52	1.00
195716--195773	29	1.9	30	86	6	82	44	1	13	39	1.54
201337--201449	58	1.9	58	90	0	181	24	18	23	33	1.97
201254--201539	142	2.0	142	86	2	396	26	17	22	33	1.96
201395--201724	84	3.9	83	84	3	410	26	18	22	33	1.96
201395--201724	167	2.0	168	87	1	475	26	18	22	33	1.96
202112--202195	43	2.0	43	85	0	114	21	20	29	28	1.98
202487--202521	15	2.2	16	95	5	63	37	31	31	0	1.58
205339--205437	45	2.1	48	85	5	132	28	10	20	41	1.84
213289--213442	31	5.0	31	96	1	274	38	22	19	19	1.94
214117--214161	21	2.1	21	87	0	63	15	24	28	31	1.96
217959--218111	31	5.0	31	95	2	265	37	22	19	19	1.94
218785--218829	21	2.1	21	87	0	63	15	24	28	31	1.96
222027--222156	18	7.1	18	70	22	76	73	0	21	4	1.07
222088--222150	27	2.5	25	80	10	74	76	0	20	3	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
222088--222151	26	2.5	27	82	7	80	75	0	21	3	0.95
228335--228411	13	5.4	13	81	17	82	15	44	23	16	1.86
228318--228405	31	2.8	32	83	16	121	15	45	23	14	1.84
228359--228418	8	8.5	8	73	26	64	15	40	25	20	1.90
228314--228377	18	3.6	18	95	0	119	17	50	21	10	1.77
228388--228419	7	4.4	7	92	7	55	12	34	28	25	1.92
228354--228411	13	4.3	13	93	4	89	15	43	24	17	1.87
229730--229765	18	2.0	18	88	0	54	52	0	16	30	1.44
230891--230999	24	4.5	24	74	4	94	21	14	16	47	1.82
233129--233229	31	3.2	32	82	13	129	15	44	22	16	1.86
233183--233242	8	8.5	8	73	26	64	15	40	25	20	1.90
233143--233201	18	3.3	18	92	0	100	16	47	22	13	1.82
233212--233243	7	4.4	7	92	7	55	12	34	28	25	1.92
233129--233235	13	8.3	13	81	14	91	15	43	22	17	1.87
234555--234590	18	2.0	18	88	0	54	52	0	16	30	1.44
235717--235825	24	4.5	24	74	4	94	21	14	16	47	1.82
241895--241950	27	2.1	27	86	6	78	3	16	42	37	1.65
249092--249150	29	2.0	29	96	0	109	47	15	13	23	1.81
253745--253803	29	2.0	29	100	0	118	49	13	13	23	1.78
256909--256983	3	24.7	3	83	2	96	34	2	2	60	1.25
284769--284841	36	2.0	36	84	10	96	49	4	0	46	1.21
292221--292280	23	2.5	24	89	5	104	46	11	0	41	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
309215--309253	20	1.9	21	89	5	62	15	30	7	46	1.74
311362--311389	2	14.0	2	100	0	56	50	0	0	50	1.00
317630--317674	23	2.0	23	90	0	72	33	22	8	35	1.85
322448--322493	20	2.4	18	76	13	56	36	2	6	54	1.39
322573--322621	24	2.1	23	88	3	71	57	0	0	42	0.99
324940--324965	2	13.0	2	100	0	52	50	0	50	0	1.00
325610--325673	6	10.7	6	100	0	128	34	48	17	0	1.47
325671--325709	5	7.8	5	91	0	51	17	35	41	5	1.72
326771--326803	17	1.9	17	88	11	50	27	6	9	57	1.53
330454--330483	10	3.0	10	95	0	51	43	0	56	0	0.99
330567--330749	91	2.0	91	100	0	366	41	9	26	21	1.84
331605--331629	2	12.5	2	100	0	50	48	0	0	52	1.00
339484--339510	11	2.5	11	100	0	54	25	0	0	74	0.83
345721--345761	7	6.1	7	97	2	68	0	14	43	41	1.45
347215--347276	27	2.2	28	97	2	117	35	33	8	22	1.84
350437--350474	19	2.0	19	94	0	67	28	26	26	18	1.98
350823--350847	12	2.1	12	100	0	50	36	8	0	56	1.29
356167--356228	31	2.0	32	93	3	108	30	9	4	54	1.54
356404--356436	17	2.0	17	88	5	50	54	0	3	42	1.15
356409--356478	25	2.9	23	83	12	79	51	0	4	44	1.21
356435--356492	25	2.5	23	81	10	64	51	0	5	43	1.24
357388--357452	8	7.8	8	75	16	51	15	4	0	80	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
357383--357462	16	4.5	17	77	16	74	18	3	0	77	0.92
357382--357462	35	2.3	35	82	4	101	18	3	0	77	0.91
370492--370523	2	16.0	2	93	0	55	46	0	3	50	1.17
376670--376702	1	33.0	1	100	0	66	0	0	0	100	0.00
377064--377095	2	16.0	2	100	0	64	50	0	0	50	1.00
377100--377149	16	3.2	15	88	5	73	58	0	2	40	1.10
377269--377816	76	7.2	76	97	1	1017	37	20	20	21	1.95
377269--377816	153	3.6	153	97	1	1028	37	20	20	21	1.95
377764--377847	31	2.8	31	92	3	136	36	22	19	21	1.95
377688--377923	107	2.2	107	96	1	440	36	21	20	21	1.95

Tables:   1   2