genome.fa.s9132.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009132.1 Hibiscus syriacus cultivar Beakdansim tig00112630_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  608087

Tables:   1   2   

This is table  2  of  2  ( 228 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
377611--377998	183	2.1	182	97	1	726	36	21	20	21	1.95
377269--377817	230	2.4	229	97	1	924	37	20	20	21	1.95
377793--378476	76	9.0	76	97	1	1264	35	21	21	21	1.96
377793--378476	151	4.5	152	97	1	1264	35	21	21	21	1.96
381730--382095	82	4.5	82	98	0	700	37	21	12	28	1.90
388196--388224	10	2.7	11	89	10	51	89	0	0	10	0.48
390784--390813	3	10.0	3	100	0	60	66	0	0	33	0.92
390791--390845	28	2.0	28	85	7	76	58	0	1	40	1.09
390791--390838	12	3.8	13	83	8	64	58	0	2	39	1.10
394296--394382	35	2.4	36	84	5	106	43	17	8	31	1.78
396995--397027	15	2.1	16	88	5	50	9	24	15	51	1.72
397775--397808	16	2.1	16	94	0	59	32	26	8	32	1.87
398241--398327	35	2.4	36	84	5	106	43	17	8	31	1.78
401457--401484	13	2.2	13	100	0	56	39	32	7	21	1.80
402319--402400	34	2.5	32	94	5	139	40	0	0	59	0.97
405357--405381	2	12.5	2	100	0	50	52	0	0	48	1.00
406703--406741	19	2.1	19	100	0	78	20	33	10	35	1.86
419421--419510	38	2.4	38	81	7	128	52	0	0	47	1.00
421238--421295	30	1.9	31	82	10	75	36	0	5	58	1.20
422827--422878	17	2.9	17	88	5	68	53	1	1	42	1.23
429733--429765	15	2.2	15	94	0	57	9	69	15	6	1.34
430285--430365	34	2.3	35	75	14	87	19	11	40	28	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
443362--443435	37	2.0	37	97	0	139	44	8	0	47	1.32
444557--444611	25	2.2	25	96	3	103	34	18	7	40	1.78
452910--452946	19	2.1	17	90	10	56	35	0	0	64	0.94
462542--462619	39	2.0	39	100	0	156	41	12	7	38	1.72
465051--465120	25	2.8	25	97	0	131	30	27	17	25	1.97
465388--465424	16	2.3	16	100	0	74	37	10	16	35	1.83
465580--465679	29	3.5	29	78	8	114	38	11	11	40	1.76
465759--465883	28	4.4	28	83	6	133	43	9	5	41	1.61
465759--465883	59	2.2	56	82	4	142	43	9	5	41	1.61
466202--466255	25	2.2	25	93	0	90	31	14	9	44	1.77
466371--466454	35	2.4	34	86	9	107	28	2	7	61	1.35
466361--466454	35	2.6	36	76	20	97	29	2	6	61	1.32
468825--468850	2	13.0	2	100	0	52	50	0	0	50	1.00
478229--478274	18	2.6	18	82	0	56	26	21	10	41	1.86
478737--478780	22	2.0	22	100	0	88	40	0	9	50	1.34
478533--479113	223	2.6	222	93	1	984	38	4	10	46	1.60
478673--479192	223	2.4	208	88	6	729	37	5	10	46	1.61
479202--479260	31	1.9	31	92	0	100	40	8	6	44	1.61
498994--499043	18	2.7	18	84	6	55	50	4	2	44	1.32
499007--499048	18	2.5	17	81	11	50	52	2	0	45	1.13
499381--499413	14	2.3	15	85	15	52	33	3	0	63	1.10
505752--505941	94	2.0	95	98	1	373	36	16	15	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
506396--506458	27	2.3	27	86	5	83	41	4	0	53	1.22
507140--507181	19	2.3	19	87	4	59	30	4	2	61	1.29
507874--507917	21	2.1	21	86	0	61	25	9	20	45	1.80
509611--509683	34	2.1	34	89	0	110	57	17	9	15	1.64
516548--516585	17	2.2	17	95	0	67	34	28	7	28	1.85
519827--519877	25	2.0	25	88	7	77	68	0	3	27	1.07
522104--522229	58	2.2	58	91	0	198	34	12	20	32	1.90
524027--524051	4	6.2	4	100	0	50	76	0	0	24	0.80
526986--527542	114	5.0	112	82	3	566	22	24	24	28	1.99
532152--532176	11	2.3	11	100	0	50	28	0	0	72	0.86
534632--534999	188	2.0	188	98	1	720	22	17	27	32	1.96
539206--539235	16	1.9	16	93	6	53	26	13	13	46	1.80
545360--545454	29	3.2	30	82	5	122	49	8	1	41	1.40
545426--545628	77	2.7	73	82	9	237	43	6	3	45	1.48
546215--547163	165	5.8	165	89	3	1374	22	21	26	29	1.99
546215--547163	249	3.8	246	83	4	1142	22	21	26	29	1.99
550554--550599	19	2.5	19	92	3	76	65	6	17	10	1.45
553927--553968	3	13.7	3	80	14	50	66	2	2	28	1.16
554028--554123	30	3.2	30	85	2	131	50	8	1	40	1.40
554090--554282	37	5.1	37	80	8	203	44	6	3	46	1.44
554095--554296	77	2.7	73	82	9	235	44	6	3	46	1.46
554678--554744	15	4.5	15	86	3	91	37	5	17	38	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
554672--554744	30	2.5	29	84	2	101	39	5	19	35	1.75
555232--555286	22	2.5	22	80	8	67	54	0	0	45	0.99
555139--555268	54	2.4	51	80	12	145	48	1	0	49	1.16
555450--555562	42	2.7	42	83	6	140	52	15	10	22	1.73
560052--560158	32	3.3	32	69	2	97	53	7	0	38	1.36
560037--560158	65	1.9	64	93	1	208	50	7	0	40	1.36
561898--561927	15	2.0	15	100	0	60	40	6	6	46	1.56
562671--562974	66	4.8	65	85	8	408	26	19	42	11	1.85
562701--562941	57	3.9	57	76	16	239	26	18	43	11	1.84
571118--571156	19	2.1	19	85	0	51	43	7	20	28	1.79
573348--573503	60	2.6	60	80	9	167	32	14	4	48	1.64
574087--574455	20	18.5	20	84	4	449	34	25	19	20	1.96
575138--575184	24	2.0	24	87	8	69	25	14	21	38	1.92
575359--575383	12	2.1	12	100	0	50	72	0	28	0	0.86
577689--577953	19	14.7	19	85	11	380	47	16	20	14	1.82
577689--577975	128	2.3	128	90	6	450	47	17	20	14	1.83
577662--577975	52	5.9	52	86	10	312	46	18	20	14	1.83
577982--578083	19	5.6	19	85	12	151	14	23	17	44	1.86
578050--578091	19	2.2	19	86	0	57	21	16	16	45	1.86
578190--578225	14	2.6	14	86	4	56	47	22	0	30	1.52
580125--580189	18	3.4	19	83	10	80	44	27	16	10	1.81
580125--580258	19	7.6	19	75	18	119	45	23	19	11	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
580180--580236	14	3.7	14	77	20	60	45	22	21	10	1.82
580125--580253	33	3.8	33	87	5	168	46	24	18	10	1.81
580254--580382	19	7.3	19	75	17	125	8	17	28	45	1.77
580254--580345	33	2.8	33	93	3	150	7	18	28	45	1.76
580426--580896	93	5.1	93	97	1	903	46	18	12	22	1.83
580426--580896	185	2.6	185	98	0	917	46	18	12	22	1.83
582598--582687	14	5.7	14	74	23	81	42	23	25	8	1.83
582590--582704	33	3.5	33	95	0	212	45	20	24	9	1.81
582597--582709	19	6.8	18	72	23	88	43	22	24	9	1.83
582721--582775	14	3.6	14	73	21	56	9	25	23	41	1.83
582705--582775	33	2.2	33	94	0	124	8	22	25	43	1.81
582716--582797	33	2.5	33	89	2	119	9	25	21	42	1.84
582728--582816	20	4.8	20	72	19	75	12	24	19	43	1.85
582896--582966	33	2.2	33	92	0	115	47	18	22	11	1.80
583148--583202	22	2.5	22	81	0	74	20	16	40	23	1.91
583348--583540	20	9.6	20	82	5	219	19	19	25	35	1.95
583348--583540	60	3.2	60	83	0	251	19	19	25	35	1.95
583596--583647	20	2.6	20	96	0	95	21	13	26	38	1.90
604382--604426	23	2.0	23	100	0	90	22	6	35	35	1.80
604451--604602	78	1.9	78	94	0	268	31	19	18	30	1.96

Tables:   1   2

The End!