genome.fa.s9134.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009134.1 Hibiscus syriacus cultivar Beakdansim tig00112634_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  270421

Tables:   1   2   

This is table  1  of  2  ( 130 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2365--3186	179	4.6	184	94	5	1436	33	16	15	34	1.90
2365--3186	360	2.3	362	94	4	1440	33	16	15	34	1.90
4537--4623	3	29.0	3	77	0	84	24	34	5	35	1.79
4537--4638	18	5.7	18	79	0	87	22	34	6	36	1.81
4545--4635	42	2.2	42	91	0	146	21	35	7	35	1.83
6095--6715	198	3.1	197	96	1	1113	32	15	15	37	1.88
6797--6841	19	2.4	19	92	0	72	57	8	2	31	1.41
8626--8691	33	2.0	33	87	0	96	24	45	1	28	1.62
11151--11197	20	2.3	20	89	10	78	17	17	10	55	1.69
12052--12102	19	2.6	20	81	12	61	29	0	9	60	1.28
15826--15875	16	3.1	16	97	0	91	54	6	10	30	1.58
17036--17215	80	2.2	80	92	0	297	22	22	25	29	1.99
17269--18457	106	11.3	106	95	0	1938	23	17	25	33	1.97
17269--21071	421	8.9	424	73	13	2575	23	18	26	32	1.97
18529--19369	105	8.0	106	95	0	1413	23	18	26	32	1.97
18529--19362	316	2.6	318	92	1	1417	23	18	26	32	1.97
17619--21061	912	3.7	912	95	2	5975	23	18	26	32	1.97
19441--21071	106	15.5	106	94	1	2717	23	17	25	32	1.97
24873--24915	16	2.7	16	100	0	86	53	6	9	30	1.59
25705--25788	37	2.3	37	82	10	102	42	1	2	53	1.21
26430--26520	3	29.7	3	83	4	110	39	2	0	58	1.10
27824--27863	12	3.1	13	82	10	55	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42580--42664	20	4.2	20	80	3	100	37	23	18	20	1.94
42586--42662	40	1.9	41	89	7	122	38	20	18	22	1.93
42669--42715	20	2.4	20	92	3	78	48	14	21	14	1.80
42616--42717	53	1.9	54	82	6	127	41	18	22	17	1.90
42737--42827	33	2.7	33	84	3	101	15	21	18	43	1.87
42969--43064	33	2.9	34	87	3	131	14	23	19	41	1.89
42698--43172	237	2.0	237	95	0	860	32	19	13	34	1.91
44571--44663	42	2.2	42	80	3	107	22	17	39	20	1.92
45143--45189	20	2.3	20	92	0	76	36	21	19	23	1.95
45236--45359	20	6.5	20	80	10	152	20	19	20	39	1.93
45198--45359	74	2.2	73	87	1	225	19	19	20	40	1.91
47238--47307	20	3.5	20	90	0	86	41	25	17	15	1.89
47351--47397	20	2.3	20	88	0	67	21	19	23	36	1.95
47729--47790	18	3.0	22	69	26	62	17	16	38	27	1.91
47966--48042	20	3.8	20	100	0	154	25	19	19	35	1.95
48046--48101	21	2.7	21	88	0	85	37	17	25	19	1.94
54402--54438	15	2.3	17	90	9	60	62	8	10	18	1.52
58565--58608	20	2.2	20	84	8	54	40	2	4	52	1.34
58770--58806	19	1.9	20	88	5	58	32	8	2	56	1.43
73189--73284	42	2.3	42	100	0	192	23	14	27	34	1.94
76772--76808	2	19.0	2	94	5	67	48	0	0	51	1.00
79952--80038	30	2.9	30	100	0	174	22	13	6	56	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82168--82237	35	2.0	35	100	0	140	34	20	17	28	1.95
82320--82375	21	2.7	21	85	0	85	8	32	37	21	1.84
91307--91372	34	1.9	34	93	0	114	36	9	18	36	1.82
94310--94370	27	2.1	27	82	8	68	44	11	1	42	1.50
94726--94768	19	2.3	18	80	11	50	20	9	6	62	1.48
95003--95103	49	2.0	49	84	7	132	24	6	7	60	1.49
95169--95234	29	2.3	29	91	0	105	54	9	21	15	1.68
95339--95378	21	1.9	21	85	10	55	45	2	7	45	1.45
96680--96718	18	2.2	18	85	0	51	23	48	17	10	1.78
99204--99315	24	4.7	24	89	0	161	25	19	21	33	1.97
99524--99578	2	27.5	2	100	0	110	49	0	0	50	1.00
101103--101130	2	14.0	2	100	0	56	50	0	0	50	1.00
103487--103532	19	2.3	20	81	7	58	28	28	17	26	1.98
103611--103662	21	2.5	21	81	3	61	38	19	25	17	1.93
103648--103781	41	3.3	41	76	9	130	35	23	16	24	1.95
103651--103785	20	6.7	20	78	7	103	33	24	17	25	1.96
103953--103996	22	2.0	22	95	0	79	20	45	15	18	1.85
104258--104316	20	3.0	20	87	0	73	16	18	22	42	1.89
105636--105680	18	2.5	18	88	0	72	26	44	15	13	1.83
106162--106207	20	2.3	20	85	7	58	39	26	19	15	1.91
106162--106264	19	5.6	19	73	14	63	42	22	20	14	1.88
106276--106330	14	3.6	14	77	17	65	10	18	25	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106271--106353	32	2.5	34	90	3	134	10	18	24	46	1.80
108226--108261	14	2.6	14	90	0	54	30	0	22	47	1.52
108384--108432	19	2.6	19	96	0	89	51	16	18	14	1.77
108470--108527	20	2.9	20	97	0	107	15	22	24	37	1.93
108751--108825	33	2.3	33	83	0	96	46	22	20	10	1.81
108823--108946	33	3.7	33	87	1	158	14	23	16	45	1.85
109718--109771	24	2.2	24	90	0	81	24	16	20	38	1.92
109946--109970	12	2.1	12	100	0	50	72	0	28	0	0.86
112231--112286	19	2.9	19	78	2	58	37	23	19	19	1.94
112258--112355	19	5.7	19	65	22	72	41	20	22	15	1.89
112259--112358	33	3.0	33	84	11	150	40	20	22	18	1.92
112351--112392	19	2.2	19	86	0	57	16	19	21	42	1.89
112360--112417	19	3.3	19	70	22	63	10	22	18	48	1.78
112532--112568	14	2.6	14	91	0	65	45	24	0	29	1.53
113962--114041	42	1.9	42	82	5	99	23	17	36	22	1.95
114327--114541	94	2.3	94	91	1	351	47	18	13	20	1.82
116249--116383	33	3.9	33	87	5	153	42	22	23	11	1.85
116224--116388	19	9.1	19	74	15	143	43	20	23	12	1.85
116952--117004	20	2.7	20	93	0	88	26	20	28	24	1.99
117013--117066	20	2.7	20	82	0	63	29	16	20	33	1.95
124962--125014	25	2.3	23	83	9	63	39	1	15	43	1.57
131892--131937	18	2.6	18	89	6	67	23	39	13	23	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136756--136799	18	2.4	18	100	0	88	40	18	15	25	1.90
144058--144109	20	2.6	20	84	6	61	59	0	9	30	1.29
144348--144387	20	2.0	20	95	0	71	40	12	22	25	1.89
150814--150892	21	3.8	21	86	1	97	45	12	20	21	1.84
150825--150906	21	4.0	21	85	6	105	46	13	19	20	1.83
150814--150892	41	1.9	42	86	2	115	45	12	20	21	1.84
151256--151322	20	3.3	20	82	2	89	19	20	14	44	1.86
151333--151393	20	3.0	20	80	7	70	18	14	21	45	1.84
151359--151401	20	2.2	20	91	0	68	16	9	25	48	1.75
151403--151444	20	2.1	20	90	0	66	23	21	23	30	1.99
159132--159201	31	2.2	32	87	5	99	35	21	8	34	1.84
162067--162112	22	2.1	22	100	0	92	50	4	26	19	1.66
166431--166723	54	5.5	53	88	1	399	25	17	21	34	1.95
166426--166723	107	2.8	108	84	3	402	25	17	21	35	1.95
172678--172711	2	17.0	2	87	0	50	44	0	0	55	0.99
172868--172932	23	2.8	23	86	4	78	27	21	13	36	1.92
172970--173061	44	2.1	44	89	0	139	28	26	21	23	1.99
172970--173067	22	4.5	22	86	0	124	27	25	21	25	1.99
173102--173131	2	15.0	2	100	0	60	50	0	0	50	1.00
177008--177057	21	2.3	22	86	10	68	56	2	0	42	1.11
187987--188156	59	2.9	60	76	9	152	30	23	6	39	1.80
195779--195822	4	11.5	4	85	9	56	22	4	27	45	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
195779--195815	18	2.1	18	89	0	56	21	5	27	45	1.73
213467--213573	56	2.0	53	92	5	178	29	28	15	25	1.96
214234--214390	78	2.0	77	93	1	269	47	20	10	21	1.80
215448--215634	94	2.0	93	98	1	365	35	12	24	27	1.92
216164--216227	32	2.0	32	100	0	128	34	40	9	15	1.80
221006--221049	21	2.1	21	95	0	79	31	6	22	38	1.81
222325--222355	6	5.2	6	100	0	62	16	0	35	48	1.46
222431--222466	3	12.3	3	94	5	65	33	0	0	66	0.92
225564--225588	12	2.1	12	100	0	50	24	8	16	52	1.70
231605--231678	2	37.0	2	100	0	148	50	0	0	50	1.00

Tables:   1   2