genome.fa.s9136.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009136.1 Hibiscus syriacus cultivar Beakdansim tig00112636_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  240531

Tables:   1   2   

This is table  1  of  2  ( 135 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1093--1266	79	2.2	78	80	6	181	50	14	9	25	1.72
6570--6633	18	3.6	18	73	23	62	51	26	14	7	1.69
9670--9728	29	2.0	29	96	0	109	49	11	13	25	1.76
14281--14339	29	2.0	29	100	0	118	49	13	13	23	1.78
14631--14663	13	2.5	13	90	0	57	72	0	0	27	0.85
14862--14886	2	12.5	2	100	0	50	48	0	0	52	1.00
25126--25200	30	2.5	30	97	0	141	33	16	6	44	1.73
28137--28161	2	12.5	2	100	0	50	52	0	0	48	1.00
28824--28864	20	2.0	20	85	0	55	39	29	9	21	1.86
28874--28943	20	3.5	20	86	7	97	45	20	15	18	1.85
28994--29061	20	3.3	20	74	11	75	26	29	16	27	1.97
29093--29134	22	1.9	22	85	9	59	30	11	26	30	1.92
29347--29408	20	3.1	20	76	0	70	22	17	17	41	1.90
31490--31516	2	13.5	2	100	0	54	51	0	0	48	1.00
55178--55254	3	25.7	3	84	5	102	1	37	0	61	1.05
56082--56177	31	3.1	31	86	0	138	38	8	12	40	1.73
56791--56847	22	2.6	22	86	10	82	52	0	1	45	1.11
56776--56850	11	7.2	10	73	18	55	49	1	1	48	1.18
59884--59948	18	3.6	18	73	8	60	23	7	0	69	1.14
60182--60214	2	16.5	2	93	0	57	48	3	0	48	1.17
60288--60326	17	2.2	18	86	4	53	15	17	0	66	1.25
60409--60482	9	8.4	9	79	8	55	35	2	1	60	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60443--60472	2	15.0	2	100	0	60	50	0	0	50	1.00
68380--68417	20	1.9	20	94	0	67	68	2	2	26	1.16
69236--69269	2	17.0	2	100	0	68	50	0	0	50	1.00
70635--70767	47	3.0	45	91	6	216	27	14	15	43	1.84
80953--81496	6	92.2	6	93	3	917	31	0	17	50	1.50
81480--81515	18	2.0	18	88	0	54	25	2	22	50	1.63
83318--83426	37	3.0	37	97	2	204	35	10	23	30	1.88
83436--83460	2	12.5	2	100	0	50	48	0	0	52	1.00
85552--85642	31	3.0	30	78	13	82	54	3	1	40	1.24
86133--86457	41	7.7	41	89	5	470	15	22	25	36	1.93
86159--86266	20	5.3	20	67	20	71	13	23	24	38	1.91
86177--86247	21	3.4	21	70	18	76	15	21	26	36	1.93
86178--86543	131	2.7	136	86	7	459	16	21	25	36	1.94
86329--86438	20	5.4	20	66	20	66	14	23	23	38	1.92
86133--86543	172	2.4	172	91	4	657	16	21	25	36	1.94
86445--86470	13	2.0	13	100	0	52	15	23	30	30	1.95
86404--86511	54	2.0	54	94	3	191	15	23	26	34	1.95
86458--86543	41	2.1	41	87	6	122	19	20	23	36	1.95
86610--86641	6	5.3	6	92	0	55	31	50	18	0	1.48
87290--87360	21	3.4	21	69	18	67	36	30	18	14	1.90
87284--87420	41	3.3	41	88	4	197	38	26	18	16	1.92
87354--87486	61	2.2	61	88	0	212	39	22	19	18	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87482--87507	13	2.0	13	100	0	52	23	15	30	30	1.95
87501--87546	19	2.3	20	81	7	58	23	17	30	28	1.97
91028--91052	2	12.5	2	100	0	50	52	0	0	48	1.00
91224--91260	2	19.0	2	88	5	58	48	2	0	48	1.15
95927--96174	130	1.9	130	90	0	397	37	14	12	35	1.84
95941--96205	130	2.0	129	79	4	282	40	13	12	33	1.82
96503--96565	28	2.3	27	81	8	72	46	1	1	50	1.20
96645--96678	16	2.0	18	88	11	54	64	5	2	26	1.30
97175--97225	21	2.4	21	80	0	57	45	25	0	29	1.54
100559--100625	30	2.3	29	89	2	98	40	5	16	37	1.73
100555--100609	15	3.7	15	73	9	58	40	3	14	41	1.63
100574--100625	15	3.5	15	73	5	52	42	5	15	36	1.71
100913--100983	19	3.6	19	70	10	54	47	1	1	49	1.18
100937--101126	28	7.1	26	69	22	76	51	1	0	47	1.11
100938--101002	27	2.4	28	82	14	91	52	1	0	46	1.10
101055--101101	22	2.1	23	88	4	69	53	0	0	46	1.00
101062--101118	21	2.6	22	81	10	64	52	0	0	47	1.00
105830--105880	2	25.5	2	100	0	102	49	0	0	50	1.00
108569--108607	18	2.2	18	90	0	60	38	7	2	51	1.44
108671--108815	41	3.8	38	77	16	122	44	4	6	44	1.48
108671--108818	79	1.9	76	82	8	181	44	4	6	45	1.47
108744--108768	12	2.1	12	100	0	50	40	8	8	44	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108618--108810	34	5.2	36	73	15	128	45	3	6	45	1.46
108768--108921	52	3.0	53	80	10	160	40	3	8	47	1.52
108846--108896	21	2.5	22	84	12	72	41	5	7	45	1.57
109007--109049	15	2.9	15	92	0	68	25	0	0	74	0.82
109006--109045	10	4.0	10	93	0	62	30	0	0	70	0.88
110520--110546	6	4.5	6	100	0	54	44	0	0	55	0.99
111114--111158	17	2.6	17	89	0	72	37	6	26	28	1.82
117612--117663	21	2.5	21	81	3	61	38	19	25	17	1.93
117652--117765	20	5.7	20	84	6	122	31	25	19	23	1.98
117649--117765	61	1.9	61	87	0	171	33	24	18	23	1.97
118307--118353	19	2.5	19	85	0	67	53	25	14	6	1.65
118349--118460	19	6.1	19	76	12	117	13	23	18	44	1.85
118357--118460	33	2.8	38	83	8	101	13	23	18	45	1.84
119910--120040	63	2.1	63	98	0	253	20	16	37	25	1.93
120207--120393	93	2.0	89	89	8	286	21	12	18	47	1.82
120610--120814	42	4.9	42	75	1	178	22	36	17	23	1.94
120610--120785	84	2.1	84	94	0	307	21	37	16	24	1.93
122170--122205	14	2.6	14	95	0	63	30	0	25	44	1.54
122315--122358	19	2.3	19	96	0	79	45	20	22	11	1.83
122386--122481	33	2.9	31	83	10	120	16	21	19	41	1.90
122423--122481	19	3.4	19	64	22	56	18	18	20	42	1.90
122453--122503	19	2.6	19	81	3	57	17	19	25	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126002--126071	20	3.5	20	92	1	115	34	25	22	17	1.96
126097--126161	19	3.7	19	84	13	86	13	20	18	47	1.82
126167--126205	20	2.0	20	94	0	69	12	10	30	46	1.75
128186--128230	20	2.2	20	88	0	63	37	26	22	13	1.91
128224--128313	32	2.8	33	86	3	128	48	24	15	11	1.77
128240--128297	14	3.9	14	75	16	62	50	24	15	10	1.75
128309--128390	18	4.6	19	75	14	86	13	20	20	45	1.85
128897--128936	18	2.2	18	90	0	62	12	17	42	27	1.85
130255--130297	20	2.2	20	86	0	59	48	20	18	11	1.79
130265--130333	20	3.5	20	93	0	111	34	26	18	20	1.96
130594--130637	22	2.0	22	90	0	70	20	15	43	20	1.88
130811--130948	61	2.3	61	85	0	195	23	17	23	34	1.96
130811--130945	20	6.7	20	80	7	121	24	17	24	33	1.96
131016--131056	21	2.0	21	85	0	55	34	31	17	17	1.93
136410--136449	6	6.7	6	97	0	53	25	15	35	25	1.94
136410--136449	12	3.3	12	92	0	62	25	15	35	25	1.94
136764--136818	18	2.9	19	94	5	103	45	10	5	38	1.63
143226--143302	31	2.5	31	80	2	91	27	31	27	14	1.95
143179--143302	63	2.0	63	82	6	153	25	29	28	16	1.97
144192--144232	5	7.8	5	84	10	55	4	21	53	19	1.63
144185--144239	22	2.5	22	100	0	110	10	23	47	18	1.80
144238--144327	10	9.1	10	73	13	71	31	26	24	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144235--144326	29	3.1	30	82	11	102	30	27	26	16	1.97
146178--146209	15	2.1	15	100	0	64	12	6	34	46	1.67
150573--150649	31	2.4	32	78	8	95	27	29	27	15	1.96
150528--150649	63	1.9	63	81	6	149	25	27	28	18	1.98
151526--151552	7	3.9	7	100	0	54	29	29	25	14	1.95
151554--151615	5	11.6	5	77	13	61	8	22	50	19	1.74
151546--151622	22	3.5	22	94	0	136	12	23	45	18	1.84
151614--151678	19	3.5	18	80	13	62	29	29	24	16	1.97
151623--151679	19	3.0	20	82	5	64	29	28	24	17	1.97
160110--160142	5	6.6	5	100	0	66	63	0	0	36	0.95

Tables:   1   2