Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009139.1 Hibiscus syriacus cultivar Beakdansim tig00112645_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80709

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9978--10020
20
2.2
20
91
4
70
39
11
4
44
1.62
10363--10429
13
5.4
13
75
10
59
28
41
1
28
1.65
11347--11397
19
2.6
20
90
3
77
43
5
15
35
1.71
15487--15537
19
2.6
20
90
3
77
43
5
15
35
1.71
19611--19660
19
2.6
19
93
0
82
44
6
16
34
1.72
23744--23794
19
2.6
20
90
3
77
43
5
15
35
1.71
27873--27923
19
2.6
20
90
3
77
43
5
15
35
1.71
32011--32061
19
2.6
20
90
3
77
43
5
15
35
1.71
37094--37126
13
2.6
13
95
4
59
42
0
30
27
1.56
39154--39182
15
2.0
15
93
6
51
75
3
20
0
0.94
46274--46310
14
2.7
14
91
4
58
24
40
0
35
1.55
46736--46766
11
2.8
11
95
0
53
87
0
12
0
0.55
48202--48245
22
2.0
21
86
4
61
25
2
34
38
1.68
52619--52644
5
5.2
5
100
0
52
80
0
19
0
0.71
53230--53275
23
2.0
23
83
8
58
36
6
8
47
1.60
55022--55090
33
2.1
33
83
5
86
30
36
1
31
1.67
60661--60764
33
3.1
33
82
9
95
30
36
1
30
1.69
61673--61721
26
2.0
25
92
8
82
36
22
22
18
1.95
61830--61892
27
2.3
28
86
2
83
63
11
14
11
1.52
69847--69897
24
2.1
24
85
7
68
13
21
0
64
1.28
71305--72131
412
2.0
410
98
0
1611
30
16
23
29
1.96
74989--75036
19
2.5
20
86
10
64
10
29
0
60
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
75341--75462
63
1.9
65
91
3
203
21
24
23
30
1.99
76292--76320
5
6.0
5
92
8
51
79
0
20
0
0.74
78930--78959
13
2.4
13
94
5
53
43
0
30
26
1.55

Tables:   1

The End!