Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009140.1 Hibiscus syriacus cultivar Beakdansim tig00112647_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  511116

Tables:   1   2   3   

This is table  3  of  3  ( 292 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
410327--410361
12
2.9
12
91
0
61
34
8
0
57
1.29
410758--410790
14
2.4
14
90
5
50
81
0
15
3
0.80
411589--411678
43
2.1
42
85
8
119
28
4
3
63
1.30
411621--411681
32
1.9
32
86
3
88
29
1
1
67
1.10
412091--412132
23
1.9
21
85
9
57
47
4
0
47
1.23
416510--416557
18
2.7
17
78
15
53
47
0
4
47
1.21
417611--417698
45
1.9
47
83
4
117
37
11
20
30
1.88
422977--423020
23
1.9
23
95
0
79
34
11
9
45
1.72
423661--423702
20
2.1
20
86
8
59
21
16
21
40
1.91
425730--425766
2
18.5
2
94
0
65
51
0
0
48
1.00
432490--432524
18
1.9
18
100
0
70
31
0
0
68
0.90
434271--434322
17
3.2
17
84
10
56
32
1
1
63
1.16
438428--438456
14
2.0
15
93
6
51
34
0
3
62
1.12
439667--439725
15
4.0
15
78
10
68
44
1
1
52
1.21
439672--439725
14
3.8
14
78
11
65
42
1
1
53
1.22
439679--439735
28
2.0
29
86
10
82
45
3
3
47
1.37
439769--439810
14
2.9
15
85
7
59
57
0
4
38
1.20
449908--449933
13
2.0
13
100
0
52
30
7
30
30
1.85
456093--457311
246
5.0
243
85
5
1654
29
23
18
29
1.98
458883--458926
21
2.1
21
84
12
56
18
13
0
68
1.22
460199--460295
42
2.3
42
83
0
122
27
14
20
37
1.92
460655--460713
21
2.8
21
94
0
100
50
22
6
20
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
467270--467389
42
2.9
40
78
8
123
27
22
20
29
1.99
467527--467638
42
2.7
42
81
5
138
25
25
20
28
1.99
466758--467799
255
4.1
253
87
4
1482
33
17
16
33
1.92
468080--468115
3
12.3
3
94
5
65
30
0
0
69
0.89
468613--468685
31
2.4
30
95
4
130
35
8
34
21
1.84
469737--469779
2
22.0
2
95
4
79
48
0
0
51
1.00
470473--470723
131
1.9
131
88
1
378
34
10
15
39
1.82
471279--471312
14
2.4
14
90
0
50
41
11
0
47
1.40
474097--474155
11
5.4
10
80
15
55
67
1
3
27
1.16
474097--474155
22
2.7
22
84
5
75
67
1
3
27
1.16
475440--475469
3
9.7
3
92
7
51
63
0
0
36
0.95
475440--475472
16
2.1
16
100
0
66
60
0
0
39
0.97
475790--476199
112
3.7
112
87
2
590
30
20
11
37
1.88
475790--476220
225
1.9
224
91
1
711
30
20
12
37
1.89
476224--476446
76
2.9
76
97
0
410
35
20
20
23
1.96
487416--487449
17
2.1
16
88
5
50
76
0
8
14
1.01
489065--489141
22
3.5
22
96
0
145
40
14
11
33
1.82
491667--491893
112
2.0
112
93
3
386
30
20
15
33
1.93
494032--494092
1
61.0
1
80
0
68
0
9
0
90
0.46
494029--494090
20
3.1
20
90
4
99
0
11
0
88
0.51
496836--496861
12
2.2
12
100
0
52
53
7
15
23
1.67
496921--496962
7
6.0
7
78
10
50
54
14
16
14
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
498461--498526
28
2.5
26
82
7
71
60
1
4
33
1.26
499375--499425
11
4.6
11
83
13
61
70
1
1
25
1.08
499368--499425
22
2.7
21
84
7
71
67
1
3
27
1.17
500695--500741
3
15.7
3
79
16
53
65
0
0
34
0.93
500697--500741
8
5.8
8
80
15
58
66
0
0
33
0.92
501817--501879
31
2.1
30
84
3
81
33
14
28
23
1.94
504249--504308
30
2.0
30
86
0
84
33
15
25
26
1.95
510015--510056
16
2.6
16
96
0
75
26
23
16
33
1.96

Tables:   1   2   3

The End!