genome.fa.s9145.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009145.1 Hibiscus syriacus cultivar Beakdansim tig00112657_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  440284

Tables:   1   2   

This is table  2  of  2  ( 208 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
262411--262706	80	3.7	79	75	13	305	30	22	17	28	1.97
262696--262720	13	1.9	13	100	0	50	24	20	24	32	1.98
262616--262800	92	2.0	93	88	1	273	27	21	20	31	1.97
273524--273551	3	9.3	3	100	0	56	32	0	0	67	0.91
273583--273637	21	2.6	21	91	0	83	32	36	23	7	1.82
276718--276804	28	3.0	28	76	10	77	32	6	1	59	1.31
287238--287335	39	2.5	40	95	3	173	47	8	24	19	1.76
287279--287715	122	3.6	122	91	1	707	40	13	20	25	1.90
287630--287989	137	2.6	136	86	1	479	38	15	17	28	1.91
288229--288256	3	9.3	3	100	0	56	32	0	0	67	0.91
288288--288382	21	4.5	21	83	0	109	32	32	24	10	1.89
289233--290793	778	2.0	778	99	0	3104	37	9	9	43	1.70
293302--293376	32	2.3	34	78	15	79	32	0	17	50	1.46
294264--294325	25	2.5	25	76	10	65	69	1	20	8	1.23
297707--297744	17	2.2	17	90	0	58	31	2	0	65	1.06
300659--300779	54	2.2	54	95	0	215	31	14	17	36	1.90
301611--301656	24	1.9	24	100	0	92	50	6	4	39	1.48
301887--301950	2	32.0	2	100	0	128	50	0	0	50	1.00
302054--302187	50	2.7	50	88	2	198	50	12	7	29	1.67
301937--302294	194	1.9	187	95	4	644	48	13	7	29	1.70
302739--302771	15	2.2	15	89	10	50	69	3	0	27	1.03
304100--304141	3	14.7	3	80	9	52	61	2	0	35	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
304277--304572	105	2.8	107	81	5	330	23	18	16	40	1.90
304490--304929	225	2.0	225	88	3	654	26	21	15	36	1.94
305797--305886	8	11.5	8	68	23	50	8	12	1	77	1.04
305798--305847	13	3.8	13	80	14	59	10	12	0	78	0.98
305791--305862	16	3.9	19	84	13	89	8	13	0	77	0.98
305789--305863	28	2.7	26	86	13	98	8	13	0	78	0.95
305797--305888	16	5.9	16	72	20	70	8	13	1	77	1.05
305803--305849	11	4.5	11	76	10	53	8	10	0	80	0.89
305789--305890	22	4.5	22	72	18	64	7	13	0	77	1.03
317611--317656	24	1.9	24	100	0	92	50	6	4	39	1.48
317759--317792	2	17.0	2	100	0	68	50	0	0	50	1.00
317855--317973	53	2.2	54	95	3	213	54	10	5	30	1.55
318029--318162	50	2.7	50	88	2	198	50	12	7	29	1.67
317789--318269	194	2.5	191	90	5	720	48	14	7	29	1.71
318717--318749	15	2.2	15	89	10	50	69	3	0	27	1.03
320080--320122	3	14.7	3	85	4	61	60	2	0	37	1.10
320175--320374	54	3.7	54	88	0	283	31	13	18	36	1.90
320175--320398	54	4.1	54	86	2	270	31	13	18	35	1.90
320494--320543	24	2.0	25	96	3	93	32	8	18	42	1.79
324546--324627	40	2.0	40	95	4	148	24	15	26	32	1.95
325064--325089	11	2.4	11	100	0	52	34	0	11	53	1.37
327987--328040	21	2.8	18	76	15	63	29	7	11	51	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328000--328039	21	2.0	21	90	5	64	32	7	10	50	1.64
330351--330479	35	3.5	35	74	19	109	34	17	21	27	1.95
330196--330480	76	3.7	76	85	2	367	35	18	21	24	1.95
334077--334111	18	1.9	18	88	0	52	65	0	5	28	1.15
334252--334337	34	2.5	34	80	10	113	50	6	1	41	1.37
336965--337016	22	2.3	22	83	6	59	42	1	1	53	1.23
337202--337245	23	2.0	23	82	13	56	50	9	2	38	1.47
339246--339285	21	1.9	21	89	0	62	55	7	7	30	1.56
343098--343158	23	2.7	22	92	2	95	22	32	26	18	1.97
343098--343168	23	3.2	22	84	7	63	23	32	28	15	1.95
350567--350606	21	1.9	21	94	0	71	25	30	25	20	1.99
350588--351555	267	3.7	263	88	3	1433	37	20	11	29	1.89
354505--354554	19	2.6	19	90	0	73	28	12	28	32	1.92
354522--354600	20	3.8	20	73	14	70	30	13	25	30	1.94
357744--357779	2	18.0	2	100	0	72	50	0	0	50	1.00
358784--358841	20	2.6	23	78	10	68	29	15	24	31	1.95
359594--359628	18	1.9	18	94	0	61	20	22	34	22	1.97
360846--360926	41	2.0	42	97	2	155	35	7	2	54	1.42
364346--364396	22	2.4	21	76	3	57	54	1	0	43	1.11
364854--365046	98	2.0	97	90	1	305	34	16	12	36	1.86
372343--372429	35	2.5	34	77	18	90	55	9	8	27	1.60
372422--372496	34	2.2	35	81	11	84	58	17	2	21	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
373663--373708	24	1.9	24	100	0	92	54	10	0	34	1.36
374801--374854	16	3.2	17	82	10	58	64	1	1	31	1.14
379320--379406	35	2.5	34	80	12	97	54	10	8	27	1.62
379625--379654	15	2.0	15	93	0	51	10	26	23	40	1.86
394183--394237	18	2.9	18	89	5	83	23	30	23	21	1.99
397062--397096	12	2.8	12	95	4	61	48	20	0	31	1.50
397475--397509	18	1.9	18	100	0	70	31	17	22	28	1.96
397539--397581	20	2.2	20	86	0	59	25	34	20	18	1.96
400247--400276	2	15.0	2	100	0	60	50	0	0	50	1.00
401790--401822	14	2.4	14	100	0	66	21	27	36	15	1.93
404659--404718	21	2.9	21	94	0	102	25	26	18	30	1.98
409103--409145	20	2.1	21	87	8	63	18	13	0	67	1.23
409102--409151	20	2.5	20	75	15	59	18	18	0	64	1.30
416280--416322	20	2.1	21	87	8	63	18	13	0	67	1.23
416279--416328	20	2.5	20	75	15	59	18	18	0	64	1.30
421342--421379	2	19.0	2	100	0	76	50	0	0	50	1.00
424516--424545	2	15.0	2	100	0	60	50	0	0	50	1.00
425992--426065	18	3.9	18	86	10	112	27	31	22	18	1.98
425992--426069	39	2.0	39	97	0	147	28	29	23	19	1.98
429327--429380	2	26.5	2	96	3	99	48	1	0	50	1.11
429731--429795	23	2.8	23	85	0	94	18	26	24	30	1.98
434351--434396	6	7.7	6	95	0	83	19	0	47	32	1.50

Tables:   1   2

The End!