genome.fa.s9146.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009146.1 Hibiscus syriacus cultivar Beakdansim tig00112659_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62096

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2025--2054	14	2.1	14	100	0	60	13	26	46	13	1.80
7038--7085	16	2.8	17	81	6	62	33	8	29	29	1.86
7621--7813	97	2.0	96	82	6	237	43	30	6	19	1.77
11467--11495	2	14.5	2	100	0	58	48	0	0	51	1.00
13496--13530	18	1.9	18	88	0	52	48	11	22	17	1.79
13640--13743	41	2.6	41	79	11	108	37	5	2	53	1.40
14837--14875	8	5.2	8	82	17	57	30	0	0	69	0.89
14835--14880	21	2.2	21	100	0	92	26	0	0	73	0.83
15131--15163	13	2.5	13	100	0	66	78	0	0	21	0.75
21525--21575	18	2.9	18	75	13	52	39	3	13	43	1.63
31080--31149	35	2.0	35	94	0	122	34	5	7	52	1.52
31084--31160	35	2.2	35	88	0	109	36	3	5	54	1.41
45593--45629	2	18.5	2	100	0	74	51	0	0	48	1.00
45841--46209	20	18.5	20	85	4	458	34	26	18	20	1.96
46881--46927	24	2.0	24	87	8	69	25	14	21	38	1.92
47102--47126	12	2.1	12	100	0	50	72	0	28	0	0.86
49431--49756	19	18.4	19	80	15	405	47	17	20	14	1.82
49431--49756	33	9.2	34	82	13	321	47	17	20	14	1.82
49459--49778	161	2.0	157	93	3	552	46	16	21	14	1.83
49459--49778	52	6.0	52	93	4	550	46	16	21	14	1.83
49785--49886	19	5.6	19	85	12	151	14	23	17	44	1.86
49993--50029	14	2.6	14	91	0	65	45	21	0	32	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50024--50096	12	6.0	12	67	20	53	57	16	1	24	1.47
50010--50082	38	1.9	38	97	0	137	53	16	1	28	1.51
51891--52025	19	7.6	19	76	16	137	45	24	19	10	1.81
51947--52003	14	3.7	14	77	20	60	45	24	21	8	1.80
51928--52020	33	2.8	33	98	0	177	47	22	20	9	1.79
51891--52025	52	2.5	54	75	18	131	45	24	19	10	1.81
52021--52097	19	4.3	19	76	17	83	9	15	29	45	1.77
52141--52517	91	4.1	93	97	2	717	46	18	12	22	1.83
54202--54291	14	5.7	14	74	23	81	42	23	25	8	1.83
54194--54308	33	3.5	33	95	0	212	45	20	24	9	1.81
54201--54313	19	6.8	18	72	23	88	43	22	24	9	1.83
54325--54379	14	3.6	14	73	21	56	9	27	23	40	1.85
54500--54570	33	2.2	33	92	0	115	47	18	22	11	1.80
54752--54805	21	2.5	22	78	3	65	20	16	38	24	1.92
54950--55134	20	9.6	20	74	15	158	18	18	26	36	1.94
54995--55095	52	1.9	52	93	0	175	22	18	26	31	1.97
55012--55077	32	2.1	32	91	0	105	22	19	25	31	1.98
55127--55203	21	3.7	20	70	13	57	27	16	23	32	1.96
55189--55240	20	2.6	20	96	0	95	21	13	26	38	1.90
55406--55446	3	14.3	3	87	10	59	34	2	0	63	1.08
60498--60562	32	2.2	27	82	15	76	46	4	4	44	1.44

Tables:   1

The End!