genome.fa.s9160.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009160.1 Hibiscus syriacus cultivar Beakdansim tig00112688_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  458650

Tables:   1   2   3   

This is table  2  of  3  ( 307 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
228775--228825	23	2.2	23	96	0	93	37	19	7	35	1.81
228781--228841	23	2.9	21	83	9	63	37	19	9	32	1.85
234375--234407	15	2.3	15	89	5	50	18	6	9	66	1.40
235007--235104	21	4.8	20	72	7	72	35	23	19	21	1.96
235073--235260	19	9.6	20	78	11	185	35	27	19	18	1.95
235073--235260	39	4.8	40	80	9	185	35	27	19	18	1.95
235637--235707	33	2.2	33	94	0	124	11	23	16	47	1.79
235826--235882	14	3.7	14	75	20	60	8	24	22	43	1.81
235809--235931	33	3.5	33	85	10	147	9	23	20	46	1.80
235867--235931	21	3.1	21	82	4	96	10	26	15	47	1.78
237615--238267	93	7.1	93	98	0	1249	21	12	19	46	1.83
238312--238440	19	7.3	19	77	17	134	48	27	15	8	1.74
238347--238440	33	2.8	33	90	4	145	50	26	15	7	1.71
238398--238424	14	1.9	14	100	0	54	48	29	14	7	1.71
238312--238440	52	2.5	52	76	12	147	48	27	15	8	1.74
238436--238608	19	9.6	19	77	12	168	10	19	23	46	1.81
238458--238514	14	3.7	14	77	20	60	10	21	22	45	1.82
238436--238608	33	4.8	38	82	5	168	10	19	23	46	1.81
240519--240557	14	2.7	14	92	4	60	35	0	23	41	1.55
240643--240763	19	6.8	19	77	18	145	47	16	23	13	1.82
240670--240724	14	3.6	14	73	21	56	45	20	23	10	1.82
240651--240743	33	2.8	33	100	0	186	46	18	22	12	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
240816--240870	14	3.6	14	73	21	56	10	23	20	45	1.82
240830--240995	53	3.2	53	95	2	291	13	21	18	46	1.83
240758--240934	86	2.1	86	90	0	273	16	24	18	41	1.90
240778--241009	86	2.7	90	90	7	358	13	22	18	45	1.84
240796--241009	33	6.2	33	76	15	220	13	22	18	45	1.83
240830--241028	53	3.8	53	87	5	196	13	21	19	45	1.84
244213--244441	20	11.4	20	87	1	253	19	17	25	36	1.94
245004--245057	23	2.4	23	78	12	58	40	1	0	57	1.09
252516--252584	6	11.5	6	78	6	77	17	1	31	49	1.56
253476--253529	20	2.7	20	80	11	74	29	29	12	27	1.94
253537--253580	21	2.1	21	91	0	70	25	22	11	40	1.87
253472--253590	20	5.8	21	73	4	55	31	25	13	30	1.94
253574--253639	20	3.4	19	81	8	71	39	25	13	21	1.90
254424--254457	12	2.8	12	90	0	50	55	29	0	14	1.40
254582--254635	24	2.2	24	83	6	65	24	16	16	42	1.88
256885--256920	18	2.0	18	88	0	54	55	27	2	13	1.52
257246--257303	20	2.9	20	81	0	80	41	20	17	20	1.90
257410--257463	25	2.2	25	96	0	99	29	9	20	40	1.83
257846--257882	18	2.1	18	89	0	56	32	5	10	51	1.60
257838--257890	24	2.2	24	86	0	70	35	3	13	47	1.61
258193--258279	39	2.2	39	93	0	147	48	20	12	18	1.80
258629--258682	14	3.9	14	82	0	72	48	18	0	33	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
260137--260185	21	2.3	22	80	16	59	26	14	30	28	1.95
260595--260642	21	2.3	21	88	0	69	39	31	12	16	1.86
262362--262393	13	2.5	13	100	0	64	78	15	6	0	0.95
262366--262399	13	2.8	12	91	8	52	76	14	8	0	1.01
262595--262662	20	3.3	20	91	4	100	25	13	38	23	1.91
262606--262672	22	3.1	22	93	4	111	20	13	41	23	1.88
262800--262844	20	2.2	20	96	0	81	17	17	24	40	1.91
263593--263633	19	2.2	19	86	4	57	58	4	0	36	1.20
264268--264305	18	2.1	18	85	9	51	36	10	52	0	1.36
269704--269755	25	2.1	25	88	0	77	26	46	9	17	1.79
269843--269873	12	2.6	12	94	0	53	9	19	48	22	1.78
269871--269965	38	2.5	38	88	5	131	44	0	0	55	0.99
270028--270101	30	2.5	30	86	2	96	20	29	14	35	1.93
274736--274805	28	2.5	28	77	6	70	42	1	1	54	1.18
275717--275762	19	2.3	20	81	7	58	28	30	17	23	1.97
275773--275849	20	3.8	20	72	16	68	12	19	24	42	1.86
275780--275859	41	2.0	41	92	0	133	15	18	25	41	1.89
277001--277215	21	10.4	21	66	20	98	36	26	18	19	1.94
276997--277116	41	2.9	41	86	1	159	36	25	18	19	1.94
277001--277134	42	3.2	42	89	1	189	34	26	17	21	1.96
277123--277218	40	2.4	41	96	1	176	38	27	19	14	1.91
277021--277235	104	2.1	104	92	1	353	35	26	17	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
278710--278782	37	2.0	37	83	5	94	46	1	2	49	1.24
281264--281290	13	2.1	13	100	0	54	70	7	14	7	1.32
283416--283442	13	2.1	13	100	0	54	70	7	14	7	1.32
285568--285594	13	2.1	13	100	0	54	70	7	14	7	1.32
289919--289964	22	2.1	22	95	0	83	19	36	13	30	1.90
296816--296914	7	14.1	7	71	14	71	69	0	29	1	0.95
296825--296884	18	3.3	19	81	11	63	70	0	28	1	0.97
296816--296894	22	3.7	21	77	9	81	70	0	27	1	0.95
296837--296919	29	2.9	29	77	13	82	68	0	28	2	1.02
297991--298074	24	3.5	24	100	0	168	28	17	28	25	1.98
299275--299314	17	2.4	17	95	0	71	25	22	2	50	1.62
303821--303980	49	3.3	49	95	0	284	36	28	15	18	1.92
304044--304150	53	2.0	53	83	7	137	43	20	2	32	1.66
306188--306248	29	2.1	30	84	3	79	36	21	4	37	1.75
306779--306821	21	2.0	21	100	0	86	23	18	16	41	1.89
310526--310606	22	3.6	22	93	1	135	24	28	27	19	1.99
311259--311288	2	15.0	2	100	0	60	50	0	0	50	1.00
312306--312350	21	2.1	21	87	0	63	15	24	28	31	1.96
315522--315602	22	3.6	22	94	1	135	24	28	27	19	1.99
316249--316290	2	21.0	2	100	0	84	50	0	0	50	1.00
317302--317346	21	2.1	21	87	0	63	15	24	28	31	1.96
318285--318329	21	2.1	21	84	8	56	33	28	22	15	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
319996--320046	25	2.0	26	96	3	95	19	23	23	33	1.97
320154--320198	23	2.0	23	86	0	63	20	26	26	26	1.99
323178--323222	23	2.0	23	81	0	54	22	26	24	26	2.00
326498--326542	21	2.1	21	84	8	56	31	26	24	17	1.97
328371--328415	23	2.0	23	86	0	63	20	26	26	26	1.99
330826--330989	49	3.4	48	92	1	256	35	27	16	20	1.94
333219--333279	29	2.1	30	84	3	79	36	18	4	40	1.72
335249--335329	23	3.8	22	79	9	78	24	33	23	18	1.97
335250--335309	23	2.7	22	89	2	84	25	33	21	20	1.97
340052--340100	21	2.5	19	87	9	64	42	0	4	53	1.20
341086--341135	10	5.1	10	80	9	50	32	6	2	60	1.32
342445--342930	120	4.0	121	88	1	686	47	3	9	39	1.54
342445--342929	241	2.0	242	90	0	765	47	3	9	39	1.54
343309--343415	56	1.9	55	96	1	196	51	3	5	39	1.43
359528--359580	27	2.0	27	100	0	106	71	7	3	16	1.24
360432--360470	14	2.7	14	88	4	60	46	0	0	53	1.00
361283--361315	16	2.1	16	88	11	50	33	0	3	63	1.10
367923--367958	17	2.1	17	89	5	54	66	0	2	30	1.06
368007--368047	20	2.0	21	85	4	57	43	4	2	48	1.37
369240--369293	16	3.3	17	73	17	60	42	0	20	37	1.52
376563--376594	16	2.1	16	94	5	57	50	6	0	43	1.27
378807--378835	15	1.9	15	100	0	58	55	6	10	27	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
387010--387053	22	2.1	22	91	8	74	36	0	0	63	0.95
387112--387235	60	2.1	60	84	3	160	33	18	16	32	1.93
387463--387579	60	2.0	60	80	0	135	39	17	15	27	1.90
388001--388035	9	4.0	9	92	7	63	77	0	0	22	0.78
388001--388035	17	2.1	17	100	0	70	77	0	0	22	0.78
390604--390653	15	3.2	15	75	8	55	38	0	6	56	1.24
396029--396079	3	16.7	3	83	4	66	66	1	1	29	1.13
396229--396522	46	6.7	44	72	14	182	23	18	30	27	1.98
396319--396521	43	4.7	43	73	12	166	22	19	31	26	1.98
396360--396550	40	4.5	41	73	12	156	24	18	30	25	1.98

Tables:   1   2   3