genome.fa.s9160.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009160.1 Hibiscus syriacus cultivar Beakdansim tig00112688_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  458650

Tables:   1   2   3   

This is table  3  of  3  ( 307 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
396283--396566	129	2.2	128	92	2	469	24	18	31	26	1.97
396579--396675	28	3.4	28	80	15	83	46	12	15	25	1.81
396599--396675	28	2.6	28	82	17	95	46	11	15	25	1.80
397177--397220	15	2.9	15	93	0	70	43	4	20	31	1.72
397316--397395	40	2.0	40	87	4	117	37	11	20	31	1.87
397377--397501	64	2.0	63	87	3	180	43	12	14	30	1.82
397646--397826	64	2.8	63	81	10	170	46	11	12	28	1.77
397708--397876	70	2.5	68	88	5	238	47	10	13	28	1.76
397841--397978	28	4.9	28	86	8	190	46	13	8	31	1.74
397964--398067	52	2.0	53	94	1	183	37	18	13	30	1.89
398063--398157	28	3.4	28	86	1	120	47	11	9	31	1.72
398393--398496	38	2.9	35	77	7	111	36	11	19	32	1.87
399163--399219	4	15.2	4	73	14	50	29	1	19	49	1.58
399167--399219	14	3.6	14	75	9	61	30	1	18	49	1.59
399163--399209	18	2.6	18	93	0	76	29	2	19	48	1.60
400402--400446	12	3.9	12	88	11	76	6	8	13	71	1.31
400389--400446	12	4.9	12	85	10	66	5	13	12	68	1.35
400402--400504	22	4.5	22	70	17	84	3	15	11	68	1.33
400443--400479	18	2.0	20	89	10	60	0	21	8	70	1.13
401106--401176	20	3.0	24	69	22	78	40	11	23	23	1.87
401093--401167	20	3.5	20	70	20	62	37	10	25	26	1.89
401091--401184	46	2.1	45	89	2	143	39	9	24	26	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
402365--402426	32	2.0	32	96	3	117	61	9	14	14	1.57
406443--406496	3	17.7	3	84	3	72	66	1	1	29	1.12
408156--408189	18	1.9	17	88	5	50	64	5	0	29	1.17
416083--416109	14	1.9	14	100	0	54	66	7	3	22	1.33
416370--416403	18	1.9	17	88	5	50	64	5	0	29	1.17
421755--421823	34	2.0	34	97	0	129	20	18	11	49	1.78
426314--426342	4	7.5	4	92	7	51	79	0	20	0	0.74
427028--427081	20	2.6	21	82	2	74	27	24	16	31	1.96
427069--427181	20	5.7	20	85	5	81	36	27	18	17	1.94
427065--427181	40	3.0	39	81	6	128	35	28	17	17	1.94
427559--427629	33	2.2	33	89	0	106	14	23	14	47	1.80
427708--427814	21	5.6	20	73	17	102	46	18	21	13	1.83
427769--427825	14	3.7	14	75	20	60	43	22	24	8	1.81
427762--427841	33	2.4	33	95	0	142	47	22	21	8	1.78
427837--427964	19	7.1	19	71	19	87	11	25	18	44	1.84
427859--427915	14	3.7	14	72	20	51	10	24	22	42	1.85
427842--427923	33	2.5	33	97	0	155	10	23	19	46	1.81
427900--427964	21	3.1	21	82	4	96	10	26	15	47	1.78
427899--427962	20	3.2	20	82	4	92	12	25	15	46	1.81
429887--430190	92	3.3	93	95	3	548	21	13	19	45	1.84
430353--430411	19	3.4	19	77	22	83	47	30	15	6	1.71
430289--430411	33	3.7	33	89	3	176	45	27	17	8	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
430305--430395	14	5.9	14	73	20	65	46	26	19	7	1.77
430443--430578	19	7.4	19	78	10	140	8	18	27	45	1.79
430429--430485	14	3.7	14	72	20	51	7	21	28	43	1.78
430443--430578	51	2.5	54	88	8	188	8	18	27	45	1.79
430407--430578	33	4.8	36	77	12	144	9	19	26	44	1.81
432321--432356	14	2.6	14	86	0	54	33	0	19	47	1.50
432444--432531	19	4.8	19	76	18	98	48	14	22	13	1.79
432444--432550	53	2.0	52	92	5	180	46	15	24	13	1.81
432540--432782	19	13.7	19	77	18	265	13	22	17	46	1.83
432546--432782	53	4.5	53	96	1	431	13	22	17	46	1.82
432546--432782	105	2.2	106	96	0	431	13	22	17	46	1.82
432617--432796	86	2.1	84	85	12	233	12	22	18	47	1.81
432546--432796	33	7.2	33	72	15	193	12	22	17	46	1.82
432546--432815	53	5.1	53	89	4	279	12	22	18	46	1.83
434315--434359	21	2.1	21	87	0	63	31	28	24	15	1.96
434955--435001	23	2.0	24	91	4	78	44	0	21	34	1.52
435178--435333	31	5.0	31	93	1	260	21	19	21	37	1.95
438362--438590	20	11.4	20	86	1	244	20	17	25	36	1.94
438584--438631	20	2.3	20	85	3	69	35	14	22	27	1.93
441511--441543	15	2.2	15	100	0	66	12	24	51	12	1.73
446536--446583	16	2.8	17	81	6	62	33	8	29	29	1.86
447117--447309	97	2.0	96	82	6	237	43	30	6	19	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
450950--450980	2	15.5	2	100	0	62	48	0	0	51	1.00

Tables:   1   2   3

The End!