genome.fa.s9164.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009164.1 Hibiscus syriacus cultivar Beakdansim tig00112699_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  622707

Tables:   1   2   3   

This is table  3  of  3  ( 309 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
437955--437981	2	13.5	2	100	0	54	48	0	0	51	1.00
438603--438722	46	2.5	48	83	6	163	27	23	24	25	2.00
439510--439555	24	1.9	24	82	8	58	19	6	6	67	1.36
440371--440433	26	2.3	27	89	8	92	25	7	4	61	1.43
442285--442319	17	2.0	18	94	5	63	28	0	0	71	0.86
448550--448823	110	2.5	105	80	6	309	36	22	17	23	1.95
449176--449368	84	2.3	84	81	3	208	34	24	18	22	1.96
461454--461591	45	3.1	42	65	15	116	45	12	13	28	1.80
461450--461632	90	2.0	90	98	0	357	42	11	16	29	1.83
465648--465841	94	2.1	95	98	2	381	27	21	14	36	1.92
469420--469481	22	2.8	22	87	0	79	43	17	16	22	1.87
469988--470112	31	4.0	31	93	2	207	39	22	19	19	1.93
470215--470327	59	1.9	58	82	5	138	28	19	8	43	1.81
477447--477526	20	3.8	21	76	12	83	26	33	25	15	1.95
477488--477527	21	1.9	21	94	0	71	27	40	25	7	1.82
481201--481244	22	2.0	23	86	4	63	9	6	6	77	1.13
487087--487154	34	2.0	34	100	0	136	20	29	17	32	1.96
487713--487747	17	2.1	17	100	0	70	11	37	17	34	1.85
490793--490860	34	2.0	34	100	0	136	20	29	17	32	1.96
491418--491452	17	2.1	17	100	0	70	11	37	17	34	1.85
496414--496531	21	5.6	21	87	0	173	24	27	19	27	1.99
496411--496531	42	2.9	42	89	0	197	23	28	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
497024--497078	21	2.7	21	88	2	85	29	16	27	27	1.97
499942--500030	28	3.0	28	71	9	79	40	4	17	37	1.71
502698--502770	18	4.0	17	75	13	58	21	2	1	73	1.03
506770--506845	32	2.4	32	86	8	102	34	11	18	35	1.87
507019--507171	61	2.5	61	89	2	227	33	22	14	30	1.93
507517--507653	21	7.4	21	60	26	67	24	21	12	40	1.88
507489--507869	36	10.2	36	81	8	431	27	19	13	39	1.89
507728--507779	21	2.5	21	90	0	77	28	26	11	32	1.91
507589--507918	159	2.1	158	91	1	527	28	20	13	38	1.89
507749--508007	138	1.9	138	94	0	455	25	20	14	39	1.90
507884--508036	36	4.3	36	81	6	170	23	20	14	41	1.89
507884--508018	73	1.9	72	85	1	189	23	21	13	41	1.88
507884--508036	73	2.1	72	83	5	186	23	20	14	41	1.89
508014--508051	15	2.5	15	87	12	60	18	21	18	42	1.90
508113--508261	33	4.6	33	87	5	189	43	18	9	28	1.81
508147--508204	18	3.4	18	67	13	59	48	13	8	29	1.73
510224--510275	22	2.4	22	96	0	95	32	13	26	26	1.94
511538--511582	23	1.9	24	90	4	74	60	0	11	28	1.31
513078--513156	2	39.5	2	100	0	158	49	0	0	50	1.00
520375--520422	13	3.4	14	82	11	62	10	31	0	58	1.32
521147--521280	66	2.0	66	88	0	196	29	14	10	44	1.79
523819--523910	45	2.0	46	93	2	159	26	17	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
527322--527413	45	2.0	45	91	2	148	27	17	25	30	1.97
536011--536100	45	2.0	46	86	2	128	27	18	25	27	1.98
539463--539530	33	2.1	33	88	5	102	27	20	10	41	1.85
541100--541185	31	2.8	31	85	0	100	27	16	9	46	1.77
544867--544955	38	2.3	38	92	0	142	33	14	22	29	1.94
544915--545003	23	3.9	23	96	0	160	35	15	22	25	1.94
545841--545869	2	14.5	2	100	0	58	48	0	0	51	1.00
558149--558256	52	2.1	53	94	3	193	28	16	14	39	1.88
565782--565863	43	1.9	43	87	5	121	28	6	8	57	1.52
565808--566140	43	7.7	43	78	10	313	26	17	6	49	1.71
566637--566717	41	2.0	40	80	7	92	46	7	12	33	1.69
568495--568551	16	3.4	16	83	9	78	68	1	0	29	1.00
568497--568551	18	3.2	18	87	5	78	69	1	0	29	0.99
568627--568704	40	2.0	40	92	0	129	35	14	17	32	1.90
572922--573018	44	2.2	44	96	0	176	44	9	8	38	1.67
575070--575122	21	2.5	21	93	0	88	35	11	13	39	1.80
575949--576272	68	4.8	68	88	0	459	30	14	24	30	1.95
576224--576482	81	3.2	81	88	3	371	32	12	26	28	1.92
592502--592572	35	2.0	35	91	0	115	47	16	7	28	1.73
594403--594437	18	1.9	18	100	0	70	42	22	11	22	1.85
594755--594791	17	2.2	17	90	0	56	32	0	16	51	1.45
602846--602891	13	3.5	14	80	14	62	67	0	26	6	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
608409--608619	84	2.5	82	84	3	262	29	15	19	35	1.93
608872--608963	41	2.3	40	88	5	134	32	15	22	29	1.95
613115--613240	62	2.0	62	96	0	234	26	16	7	48	1.74

Tables:   1   2   3

The End!