genome.fa.s9167.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009167.1 Hibiscus syriacus cultivar Beakdansim tig00112703_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  189278

Tables:   1   2   

This is table  1  of  2  ( 144 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4881--4970	28	2.8	33	69	26	86	44	3	12	40	1.58
8845--8879	17	2.1	17	100	0	70	40	17	14	28	1.88
17028--17079	21	2.5	21	81	3	61	38	19	25	17	1.93
17068--17168	20	5.0	20	80	7	105	32	24	17	24	1.97
17065--17181	61	1.9	61	83	0	153	34	23	17	25	1.96
17133--17182	20	2.5	20	83	0	55	28	24	18	30	1.97
17734--17777	18	2.4	19	84	7	63	47	27	15	9	1.76
17787--17874	33	2.6	33	96	1	158	11	27	22	38	1.88
17842--17899	20	2.9	20	80	10	64	13	24	18	43	1.87
19991--20193	42	4.8	42	79	2	194	22	36	17	22	1.94
20127--20193	21	3.2	21	66	6	55	23	35	20	19	1.95
19988--20163	84	2.1	84	98	0	343	21	38	17	23	1.93
19988--20193	84	2.5	84	92	1	306	22	36	17	22	1.95
21404--21433	12	2.5	12	100	0	60	26	6	26	40	1.81
21555--21590	14	2.6	14	95	0	63	30	0	25	44	1.54
21697--21763	19	3.8	19	77	18	81	44	20	22	11	1.84
21873--21931	19	3.4	19	68	22	65	13	23	18	44	1.86
21772--21931	33	4.9	32	86	3	185	16	21	18	42	1.89
23971--24008	12	3.1	12	96	3	67	0	26	0	73	0.83
24183--24236	24	2.2	24	93	0	90	42	20	14	22	1.88
24183--24250	24	2.8	24	86	0	64	39	20	14	25	1.91
25026--25104	20	3.9	20	77	9	70	35	22	18	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25064--25113	20	2.5	20	80	0	73	38	22	18	22	1.94
25326--25413	20	4.4	20	71	5	88	37	23	20	18	1.94
25427--25497	33	2.2	33	81	0	79	21	19	19	39	1.93
25445--25498	14	3.5	14	75	22	54	12	20	18	48	1.81
25625--25661	14	2.6	14	86	0	56	48	21	0	29	1.50
27540--27584	20	2.3	20	80	3	56	42	17	20	20	1.90
27568--27626	19	3.4	19	68	22	56	47	22	16	13	1.82
27584--27637	14	3.5	14	73	22	54	48	24	16	11	1.79
27568--27660	33	2.8	33	90	1	143	45	21	18	15	1.85
27694--27751	14	3.9	14	79	16	71	10	17	24	48	1.78
27677--27767	32	2.8	33	93	3	157	13	17	21	47	1.82
27752--27795	20	2.3	19	84	11	54	20	25	18	36	1.95
28288--28332	18	2.5	18	88	0	72	13	15	44	26	1.83
29649--29686	20	1.9	20	88	0	58	50	21	15	13	1.78
29951--29994	22	2.0	22	95	0	79	18	15	45	20	1.85
30224--30273	20	2.5	20	93	0	82	26	22	24	28	1.99
30162--30273	41	2.8	41	82	4	138	24	18	22	34	1.96
30183--30297	61	1.9	61	81	3	142	23	20	21	33	1.97
33387--33502	20	5.7	19	78	10	79	36	24	17	22	1.95
33385--33462	41	1.9	41	83	0	102	39	23	16	20	1.92
33670--33713	22	2.0	22	95	0	79	20	45	15	18	1.85
33977--34014	20	1.9	20	88	0	58	13	15	21	50	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35332--35376	18	2.5	18	88	0	72	26	44	15	13	1.83
35875--35912	20	2.0	20	89	5	60	31	23	26	18	1.97
35913--36002	14	5.9	14	73	19	81	47	22	17	12	1.80
35897--36019	32	3.8	33	95	2	214	47	21	18	13	1.82
36036--36092	14	3.8	14	76	17	60	8	15	24	50	1.72
36031--36108	32	2.4	32	93	0	129	10	17	23	48	1.78
36093--36147	20	2.8	19	89	5	83	16	25	23	34	1.95
38016--38050	14	2.5	14	85	0	52	37	0	14	48	1.44
38128--38167	19	2.1	19	85	4	53	40	27	20	12	1.88
38159--38212	14	3.5	14	77	22	63	48	20	20	11	1.80
38236--38273	20	1.9	20	94	0	67	15	21	23	39	1.92
39334--39387	24	2.2	24	90	0	81	24	16	20	38	1.92
39562--39586	12	2.1	12	100	0	50	72	0	28	0	0.86
41859--41996	19	7.7	19	72	17	107	42	21	21	15	1.88
41879--41975	33	2.9	33	89	3	142	42	21	21	14	1.88
42020--42053	14	2.4	14	85	0	50	8	23	20	47	1.78
42175--42211	14	2.6	14	91	0	65	45	24	0	29	1.53
43569--43635	21	3.2	21	68	4	55	19	20	35	23	1.95
43569--43691	42	2.9	41	80	7	113	22	17	36	22	1.95
45694--45873	19	9.8	19	73	14	119	44	21	21	12	1.85
45719--45817	33	3.0	33	86	1	135	39	25	23	12	1.89
45789--45878	19	4.7	19	93	2	153	46	22	20	11	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45789--45878	39	2.3	38	94	1	153	46	22	20	11	1.81
45874--45940	19	3.5	19	85	2	89	10	16	25	47	1.78
46456--46508	20	2.7	20	93	0	88	26	20	28	24	1.99
46457--46550	20	4.7	20	81	2	80	25	18	24	31	1.97
46477--46571	41	2.3	41	80	3	102	22	20	22	35	1.96
46621--46661	21	2.0	21	85	0	55	34	31	17	17	1.93
47144--47187	21	2.1	21	100	0	88	34	13	22	29	1.93
48080--48117	3	12.7	3	100	0	76	0	31	0	68	0.90
52292--52339	20	2.4	21	89	6	73	35	27	8	29	1.86
52341--52418	40	2.0	40	84	5	104	43	15	8	32	1.78
52608--52680	30	2.3	32	93	4	123	8	39	0	52	1.32
52606--52680	15	4.9	15	75	16	73	8	40	0	52	1.31
53220--53271	21	2.5	21	81	3	61	38	19	25	17	1.93
53257--53388	41	3.2	41	77	6	124	34	24	16	24	1.95
53260--53374	20	5.7	20	81	6	106	31	25	18	25	1.97
53562--53605	22	2.0	22	95	0	79	20	45	15	18	1.85
53850--53913	20	3.2	20	81	0	74	17	18	20	43	1.88
55233--55277	18	2.5	18	88	0	72	26	44	15	13	1.83
55759--55804	20	2.3	20	84	0	56	36	23	21	17	1.94
55770--55814	20	2.3	20	84	3	65	37	20	24	17	1.93
55798--55861	19	3.6	19	70	20	66	45	20	20	14	1.85
57818--57853	14	2.6	14	90	0	54	30	0	22	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57970--58037	19	3.8	19	81	14	92	48	17	20	13	1.80
58065--58113	20	2.5	20	100	0	98	16	22	26	34	1.95
59170--59223	24	2.2	24	90	0	81	24	16	20	38	1.92
59398--59422	12	2.1	12	100	0	50	72	0	28	0	0.86
61713--61843	19	7.7	19	66	23	85	41	19	23	14	1.88
61713--61839	33	3.8	33	86	4	193	41	19	23	14	1.89
61714--61846	66	2.0	66	95	0	239	40	19	23	16	1.91
61848--61900	19	2.8	19	97	0	97	13	20	20	45	1.84
62007--62043	14	2.6	14	91	0	65	45	24	0	29	1.53
63428--63507	42	1.9	42	81	0	97	23	16	38	21	1.92
65506--65646	19	7.8	19	70	17	95	43	19	24	13	1.86
65531--65629	33	3.0	33	87	1	144	39	21	26	13	1.90
65647--65713	19	3.5	19	83	2	89	8	16	23	50	1.73
66230--66282	20	2.7	20	93	0	88	26	20	28	24	1.99
66293--66344	20	2.5	20	81	3	59	17	23	19	40	1.91
66972--67027	20	2.8	21	78	10	64	28	1	28	41	1.66
79428--79484	28	2.0	28	86	0	78	45	5	1	47	1.35
82354--82423	19	3.7	19	94	0	122	27	28	20	24	1.99
82553--82686	20	6.7	20	83	7	128	30	25	18	25	1.98
82550--82666	61	1.9	61	85	0	162	33	24	17	23	1.97
83198--83264	19	3.5	19	81	2	80	47	23	16	11	1.80
83260--83425	20	9.1	19	74	16	136	12	22	22	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83265--83341	39	2.0	39	87	5	111	9	19	25	45	1.80
83313--83400	33	2.6	33	92	1	140	11	25	25	38	1.89
85420--85502	42	2.0	42	85	0	112	21	38	16	22	1.93
86900--86935	14	2.6	14	95	0	63	30	0	25	44	1.54
87114--87238	33	3.8	31	91	5	169	19	20	18	42	1.90
87114--87238	19	7.4	19	66	24	100	19	20	18	42	1.90
89730--89783	24	2.2	24	90	0	81	38	20	16	24	1.92
90842--90899	20	2.9	20	94	0	98	37	22	22	17	1.93
90923--90976	14	3.5	14	77	22	63	11	20	20	48	1.80
90905--90975	33	2.2	33	84	0	88	19	19	21	39	1.93

Tables:   1   2