genome.fa.s9167.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009167.1 Hibiscus syriacus cultivar Beakdansim tig00112703_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  189278

Tables:   1   2   

This is table  2  of  2  ( 144 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90918--90995	33	2.4	33	91	0	120	12	23	21	42	1.87
91083--91119	14	2.6	14	86	0	56	48	21	0	29	1.50
92991--93057	19	3.5	19	79	4	80	38	23	22	14	1.92
93123--93180	14	3.9	14	77	16	62	10	15	24	50	1.75
93106--93196	32	2.8	33	93	3	157	12	17	21	48	1.80
93181--93235	20	2.8	19	83	8	65	16	23	23	36	1.94
93717--93761	18	2.5	18	88	0	72	13	15	44	26	1.83
95080--95117	20	1.9	20	88	0	58	50	21	15	13	1.78
95599--95692	20	4.7	20	80	2	89	23	18	24	34	1.96
95619--95696	41	1.9	41	86	0	111	21	16	21	39	1.92
95579--95693	20	5.7	20	78	5	88	23	17	23	35	1.95
95619--95714	41	2.3	41	80	3	104	20	19	21	37	1.94
103152--103337	34	5.3	34	75	9	133	44	4	6	44	1.52
103206--103370	34	5.0	33	75	12	124	45	3	6	44	1.45
120585--120618	16	2.2	16	89	5	52	17	5	2	73	1.16
124328--124373	23	2.0	23	100	0	92	13	47	8	30	1.72
132564--132621	30	1.9	31	85	3	82	31	18	13	36	1.90
174318--174364	6	7.8	6	97	0	76	17	55	10	17	1.69
177618--177676	27	2.1	29	84	6	77	44	5	1	49	1.34
182866--182906	20	2.0	21	85	4	57	53	2	2	41	1.27
184265--184294	11	2.8	11	95	5	53	43	0	0	56	0.99
184290--184390	3	33.7	3	93	0	175	63	0	1	34	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
184711--185262	112	5.0	113	94	2	922	28	19	14	37	1.90
185646--185956	83	3.7	83	93	2	491	36	22	12	28	1.91

Tables:   1   2

The End!