Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009176.1 Hibiscus syriacus cultivar Beakdansim tig00112740_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  348284

Tables:   1   2   

This is table  2  of  2  ( 161 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
187876--187912
20
1.9
19
89
10
58
35
0
32
32
1.58
188287--188325
20
2.0
20
100
0
78
35
0
28
35
1.58
194741--194781
15
2.7
15
84
3
55
58
0
0
41
0.98
201657--201715
18
3.1
18
72
13
64
13
20
23
42
1.88
201846--201965
21
5.9
21
67
21
85
35
25
21
17
1.95
201875--201944
20
3.5
20
69
18
63
38
24
24
12
1.90
201856--201968
41
2.8
41
95
2
203
36
26
22
15
1.93
201913--201997
21
4.1
21
69
14
68
36
27
18
17
1.94
207797--207919
60
2.0
60
89
6
187
33
16
15
34
1.90
208427--208479
18
2.7
20
77
14
65
47
5
7
39
1.56
209598--209649
20
2.6
20
87
6
79
21
21
15
42
1.89
226036--226078
21
2.0
22
81
4
52
30
2
6
60
1.35
232759--232822
32
2.0
32
84
3
85
34
17
10
37
1.85
232944--233170
50
4.5
50
95
1
402
29
17
27
25
1.97
241363--241406
14
3.1
14
86
0
70
9
2
18
70
1.24
241375--241437
24
2.6
24
87
0
90
12
9
15
61
1.55
241839--241871
2
16.5
2
100
0
66
48
0
0
51
1.00
266885--266973
30
2.9
31
81
8
101
17
16
11
53
1.71
267259--267342
21
4.0
21
84
3
107
38
13
7
41
1.71
268211--268246
18
2.0
18
94
0
63
16
25
44
13
1.85
268712--268749
4
9.5
4
94
0
58
26
5
23
44
1.74
269003--269030
4
7.0
4
100
0
56
25
0
50
25
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
268823--269030
99
2.1
100
86
4
296
29
9
28
32
1.89
285204--285269
28
2.4
28
86
0
78
21
19
24
34
1.96
291333--291364
15
2.1
15
94
0
55
9
6
6
78
1.10
303665--303732
34
2.0
34
85
5
93
47
4
1
47
1.31
304254--304399
72
2.0
74
97
2
278
23
9
16
50
1.75
304479--304509
2
15.5
2
100
0
62
48
0
0
51
1.00
307347--307512
65
2.6
64
80
8
165
30
22
16
30
1.96
307419--307554
64
2.1
64
81
14
156
31
22
16
29
1.96
315188--315230
21
2.0
22
86
4
61
11
2
30
55
1.48
318261--318296
18
2.0
18
88
0
54
27
27
5
38
1.79
323056--323084
2
14.5
2
100
0
58
48
0
0
51
1.00
324051--324081
16
1.9
16
93
0
53
29
0
16
54
1.42
324982--325063
39
2.1
39
97
0
155
40
6
15
37
1.73
327817--327849
6
5.7
6
85
7
50
21
0
0
78
0.75
332068--332095
12
2.3
12
100
0
56
17
0
0
82
0.68
332280--332314
14
2.5
14
100
0
70
37
0
14
48
1.44
333590--333710
39
3.1
39
95
0
206
39
5
18
36
1.74
337822--337875
25
2.2
25
82
0
63
31
9
0
59
1.29
341100--341172
37
2.0
37
94
2
130
41
10
9
38
1.73

Tables:   1   2

The End!