genome.fa.s9177.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009177.1 Hibiscus syriacus cultivar Beakdansim tig00112742_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  392072

Tables:   1   2   

This is table  2  of  2  ( 158 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
364583--365176	297	2.0	295	93	0	1017	30	12	16	39	1.87
364964--366173	199	6.1	198	85	5	1576	28	13	14	42	1.85
366223--366261	20	1.9	21	94	5	71	12	15	25	46	1.81
374238--374295	20	2.6	22	89	10	84	25	22	20	31	1.98
374283--374423	64	2.2	63	82	7	169	25	24	17	32	1.97
375233--375271	20	2.0	20	94	0	69	20	25	30	23	1.98
375928--375962	2	17.5	2	100	0	70	51	0	0	48	1.00
378224--378287	33	2.0	32	84	9	85	40	4	1	53	1.31
378513--378564	21	2.5	21	87	3	70	38	17	25	19	1.93
378553--378653	20	5.0	20	80	7	105	32	24	17	24	1.97
378615--378667	20	2.7	20	90	0	79	24	28	18	28	1.98
378550--378666	61	1.9	61	83	0	153	33	24	17	24	1.96
379222--379262	19	2.2	19	90	0	64	48	26	17	7	1.73
379258--379403	19	8.1	19	72	17	105	13	23	19	43	1.86
379291--379378	33	2.6	33	92	1	149	12	26	21	39	1.89
381487--381553	21	3.2	21	66	6	55	23	35	20	19	1.95
381435--381553	42	2.8	42	76	12	102	23	36	17	22	1.95
382912--382943	14	2.3	14	94	0	55	31	0	25	43	1.55
383084--383154	33	2.2	33	82	5	81	18	23	19	38	1.93
383103--383161	19	3.4	19	73	22	74	13	22	18	45	1.84
385641--385694	24	2.2	24	90	0	81	40	20	16	22	1.91
386434--386484	20	2.5	20	93	0	84	31	17	29	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
386697--386766	19	3.5	20	88	7	108	34	25	24	15	1.95
386792--386856	19	3.7	19	80	13	77	13	18	18	49	1.80
386983--387019	14	2.6	14	86	0	56	48	21	0	29	1.50
388878--388945	20	3.5	20	85	2	93	39	23	22	14	1.91
388934--388991	14	3.9	14	79	16	71	48	24	17	10	1.78
388918--388996	32	2.4	33	95	2	142	46	22	18	11	1.81
389003--389097	19	5.7	18	70	24	82	12	20	22	45	1.84
389008--389097	32	2.8	33	91	6	157	12	18	22	46	1.82
389082--389136	20	2.8	19	83	8	65	16	23	23	36	1.94
389615--389659	18	2.5	18	88	0	72	13	15	44	26	1.83
390990--391065	18	4.6	18	78	18	101	17	50	21	11	1.77
391012--391071	13	4.3	13	73	22	59	16	46	21	15	1.83
390994--391071	30	2.5	31	91	4	140	16	47	21	14	1.82
391063--391093	7	4.4	7	91	0	53	12	35	25	25	1.92
391047--391092	14	3.3	15	88	8	62	15	39	23	21	1.92
390994--391093	18	4.9	20	75	23	77	16	44	23	17	1.87

Tables:   1   2

The End!