genome.fa.s9179.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009179.1 Hibiscus syriacus cultivar Beakdansim tig00112746_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  314897

Tables:   1   2   

This is table  2  of  2  ( 179 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
189706--189751	3	15.7	3	86	13	69	67	0	0	32	0.91
191099--191196	32	3.0	33	62	26	80	27	14	31	26	1.95
192901--193079	87	2.1	87	98	0	349	41	13	19	25	1.88
195286--195320	13	2.6	14	86	4	54	40	0	2	57	1.14
195266--195320	28	2.0	27	82	10	67	40	1	3	54	1.28
196583--196671	29	3.1	29	85	0	124	17	40	28	13	1.88
196686--196743	10	5.6	10	73	15	55	22	46	20	10	1.81
198530--198744	113	1.9	114	88	6	330	41	9	10	38	1.72
205848--205934	22	4.1	22	81	11	119	29	32	22	14	1.94
210519--210636	22	5.5	22	88	8	181	28	32	24	14	1.94
210519--210636	40	2.8	41	87	10	157	28	32	24	14	1.94
210500--210636	62	2.2	62	93	0	229	27	32	24	15	1.95
211019--211063	24	2.0	24	82	8	58	35	11	2	51	1.50
214224--214404	54	3.4	54	84	1	238	27	18	19	34	1.95
215681--215757	3	25.7	3	97	0	127	33	3	0	62	1.14
217741--218096	131	2.7	131	85	0	453	34	11	15	38	1.83
223403--223441	18	2.1	19	85	4	53	71	5	7	15	1.26
224542--224570	14	2.1	14	100	0	58	44	13	0	41	1.44
226044--226222	54	3.3	54	84	1	234	27	17	19	34	1.95
226300--226331	13	2.3	15	89	10	50	25	31	15	28	1.96
229525--229880	131	2.7	131	86	2	473	35	11	14	39	1.82
235188--235235	18	2.7	18	80	0	51	75	4	10	10	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
240767--240823	7	8.7	7	75	14	50	73	0	14	12	1.09
240756--240823	19	3.7	18	72	18	59	75	0	14	10	1.06
240766--240828	26	2.3	26	81	13	74	73	0	15	11	1.10
240751--240858	41	2.7	40	76	21	100	72	0	17	10	1.12
242237--242429	93	2.1	94	82	4	230	33	20	12	33	1.90
242330--242765	135	3.2	133	81	5	475	31	22	16	29	1.96
242543--242795	133	1.9	133	84	0	335	30	22	18	28	1.97
246890--246954	28	2.3	29	97	2	123	32	7	12	47	1.69
250972--250998	5	5.4	5	100	0	54	40	0	40	18	1.51
258892--258921	2	15.0	2	100	0	60	50	0	0	50	1.00
261466--261824	131	2.7	131	83	1	459	31	9	19	39	1.83
265505--265538	11	3.1	11	91	0	59	26	23	8	41	1.83
269730--269926	93	2.1	93	85	5	265	35	21	14	28	1.93
269813--270059	134	1.8	134	90	0	395	34	21	13	31	1.92
269804--270086	134	2.1	134	83	0	377	33	21	13	32	1.92
270299--270395	3	33.0	3	95	4	180	32	0	0	67	0.91
270654--271010	197	1.8	197	100	0	714	26	33	16	22	1.95
273726--273751	13	2.0	13	100	0	52	15	38	0	46	1.46
275077--275242	85	2.0	85	83	7	212	28	17	19	33	1.95
275214--275265	13	4.0	13	74	0	50	26	15	23	34	1.94
277875--278241	131	2.8	131	82	2	414	29	10	17	43	1.82
282926--282992	35	1.9	35	90	0	107	32	19	10	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
284415--284450	18	1.9	19	88	5	56	16	19	5	58	1.58
284745--284845	19	5.3	19	64	17	66	32	4	12	49	1.62
284742--284863	38	3.2	38	100	0	244	31	4	13	50	1.62
284764--284863	19	5.3	19	64	17	64	32	5	12	51	1.60
285290--285332	13	3.3	13	83	0	50	30	18	11	39	1.86
285304--285554	85	3.0	84	77	6	256	31	20	15	32	1.93
285574--285608	2	18.0	2	94	5	63	48	0	0	51	1.00
290559--290599	21	1.9	22	85	5	57	26	4	65	2	1.25
291490--291521	14	2.1	16	88	11	50	40	0	0	59	0.97
298649--298768	60	2.0	60	88	0	177	32	17	22	27	1.96
298830--298872	20	2.2	20	86	0	59	20	4	18	55	1.60
298869--299018	45	3.3	44	82	11	187	39	6	23	31	1.79
300976--301007	16	2.0	16	93	0	55	46	12	12	28	1.78
310575--310755	66	2.8	64	85	7	231	29	17	22	30	1.96
310595--310755	66	2.5	65	91	2	252	29	16	21	32	1.96

Tables:   1   2

The End!