genome.fa.s9185.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009185.1 Hibiscus syriacus cultivar Beakdansim tig00112758_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  682201

Tables:   1   2   3   

This is table  3  of  3  ( 274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
633293--633384	42	2.2	42	88	1	141	20	15	42	21	1.89
633320--633380	21	2.9	21	73	9	70	21	13	42	22	1.87
633747--633814	20	3.5	19	82	6	82	38	23	23	14	1.92
633747--633822	39	1.9	40	81	7	93	40	22	22	14	1.90
633839--633995	20	8.6	20	66	18	72	14	19	22	43	1.87
633862--633920	14	3.9	14	76	20	64	10	16	23	49	1.77
633844--633936	33	2.8	33	95	1	159	12	18	20	48	1.80
635884--635942	20	3.0	20	87	0	73	42	22	18	16	1.89
636208--636262	22	2.5	22	90	0	92	16	18	45	20	1.86
636448--636531	20	4.2	20	92	0	141	26	17	28	27	1.98
636571--636623	21	2.5	22	81	6	74	33	18	26	20	1.96
639917--640010	46	2.0	48	83	8	122	32	13	22	30	1.93
644669--645241	233	2.5	233	90	0	878	32	16	17	34	1.92
645727--645810	44	1.9	44	90	4	134	41	35	9	13	1.76
647670--647789	31	3.8	31	78	7	118	28	18	21	31	1.97
648951--649576	113	5.5	113	87	2	866	27	24	17	31	1.97
648951--649540	225	2.6	225	87	1	849	26	24	16	31	1.97
648951--649576	338	1.9	337	87	4	938	27	24	17	31	1.97
649465--649763	135	2.2	134	83	6	390	28	24	16	29	1.97
649909--649953	3	15.3	3	90	4	74	35	0	0	64	0.94
651826--651858	2	16.5	2	100	0	66	48	0	0	51	1.00
658342--658379	19	2.0	19	94	0	67	39	0	13	47	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
658788--658814	14	1.9	14	100	0	54	22	0	14	62	1.31
661091--661173	39	2.1	39	90	0	130	50	20	6	22	1.70
664232--664307	30	2.5	30	86	0	107	30	14	5	50	1.65
664595--664673	29	2.7	29	84	3	88	26	21	15	36	1.93
664661--664732	29	2.5	30	84	6	94	18	19	20	41	1.90
665245--665275	16	1.9	16	93	0	53	22	12	19	45	1.84
665320--665376	25	2.4	24	80	14	64	22	17	22	36	1.94
665851--665900	24	2.1	24	88	7	75	36	14	6	44	1.69
666339--666448	58	1.9	58	83	3	141	37	18	14	30	1.90
666339--666464	58	2.2	58	80	5	137	35	17	15	30	1.92
679546--679580	15	2.3	15	95	0	61	37	31	11	20	1.88
680248--680496	117	2.1	116	88	0	390	15	31	20	32	1.94

Tables:   1   2   3

The End!