genome.fa.s9189.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009189.1 Hibiscus syriacus cultivar Beakdansim tig00112762_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  966119

Tables:   1   2   3   4   

This is table  4  of  4  ( 434 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
872829--872877	19	2.6	19	96	0	89	51	16	18	14	1.77
872829--872884	19	2.9	18	84	5	67	51	16	19	12	1.75
872915--872952	20	1.9	20	88	0	58	18	21	21	39	1.93
874005--874058	24	2.3	23	87	6	81	25	16	20	37	1.93
874232--874256	12	2.1	12	100	0	50	72	0	28	0	0.86
876544--876670	33	3.9	32	83	8	166	43	17	22	17	1.88
876545--876677	66	2.0	66	91	2	214	42	17	21	18	1.90
876832--876868	14	2.6	14	91	0	65	45	24	0	29	1.53
878220--878425	42	4.9	41	73	9	164	22	17	36	22	1.95
878220--878286	21	3.2	21	68	4	55	19	20	35	23	1.95
878250--878425	84	2.1	84	98	0	343	23	17	38	21	1.93
878642--878825	88	2.0	90	87	5	264	47	18	11	21	1.80
878969--879110	63	2.3	63	86	2	151	26	36	16	19	1.94
878992--879122	63	2.1	63	98	0	253	23	36	18	21	1.95
880600--880695	33	2.9	33	93	0	165	43	20	23	11	1.85
880575--880700	19	7.1	19	70	18	92	44	18	23	13	1.85
880696--880762	19	3.5	19	77	4	62	10	14	25	49	1.76
881280--881373	20	4.7	20	80	7	91	23	19	25	31	1.98
881300--881394	41	2.3	41	81	3	111	20	21	23	35	1.96
881444--881484	21	2.0	21	85	0	55	34	31	17	17	1.93
881928--881970	20	2.0	20	86	8	59	25	9	0	65	1.22
882762--882823	29	2.1	29	90	0	97	9	11	35	43	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
883249--883279	16	1.9	16	93	0	53	48	0	9	41	1.36
883376--883412	19	1.9	19	94	0	65	54	2	8	35	1.44
886033--886114	30	2.7	30	82	0	101	36	9	17	36	1.82
893146--893266	3	40.3	3	100	0	242	33	0	0	66	0.92
893551--893592	19	2.2	20	87	12	61	45	7	0	47	1.30
895181--895242	28	2.2	28	97	0	115	33	16	11	38	1.84
902055--902102	23	2.1	23	88	0	69	35	12	18	33	1.89
902385--902457	23	3.2	23	84	7	94	39	20	5	34	1.76
902860--902984	39	3.2	39	96	1	225	17	13	20	48	1.81
903243--903279	18	2.1	18	89	0	56	51	10	5	32	1.60
903527--903577	25	2.0	25	92	0	84	39	19	7	33	1.81
903845--903896	23	2.3	22	90	6	77	44	19	1	34	1.62
903855--903917	23	2.7	23	90	0	90	38	19	6	36	1.77
904275--904326	23	2.3	22	90	6	77	44	19	1	34	1.62
904285--904347	23	2.7	23	90	0	90	38	19	6	36	1.77
907472--907514	22	1.9	23	85	4	61	46	11	11	30	1.76
907510--908202	183	3.8	183	95	1	1223	33	16	14	36	1.89
909394--909468	3	25.0	3	79	0	78	25	34	5	34	1.79
910131--910648	198	2.6	199	97	1	984	29	15	17	37	1.91
910767--910814	19	2.6	19	93	3	80	56	10	2	31	1.45
912674--912738	21	3.1	21	80	6	69	15	29	15	40	1.88
914958--915004	20	2.4	19	86	6	76	19	17	10	53	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
915124--915182	20	3.0	20	82	9	77	18	15	13	52	1.74
915233--915670	224	2.0	224	94	2	765	39	7	7	45	1.61
918063--918091	2	14.5	2	100	0	58	48	0	0	51	1.00
921293--921346	26	2.1	27	83	12	71	51	12	9	25	1.70
924608--924644	14	2.6	14	91	0	65	48	0	0	51	1.00
926813--926881	29	2.4	29	82	2	86	27	4	14	53	1.59
929157--929221	2	32.5	2	93	0	112	49	0	3	47	1.17
930154--930244	23	4.0	23	88	0	128	19	27	26	26	1.99
931208--931261	20	2.7	19	83	8	72	14	16	22	46	1.84
932573--932671	42	2.4	41	83	5	126	28	34	17	20	1.95
932780--932835	21	2.7	21	88	0	76	19	12	33	33	1.89
932799--932898	42	2.4	41	76	5	119	22	13	29	36	1.91
932860--932899	21	1.9	21	89	0	62	25	12	25	37	1.91
933004--933045	4	10.5	4	89	0	66	26	0	2	71	0.98
933178--933275	42	2.3	42	87	0	133	22	34	17	25	1.95
933178--933275	21	4.7	21	82	5	117	22	34	17	25	1.95
935702--936005	149	2.0	149	99	0	599	36	19	16	27	1.93
936093--936153	30	2.3	26	77	22	72	32	21	6	39	1.79
942020--942320	149	2.0	146	98	1	575	35	20	16	27	1.94
942408--942468	30	2.3	26	77	22	72	32	21	6	39	1.79
945976--946014	15	2.5	15	83	4	51	66	0	5	28	1.12
946151--946343	20	9.6	20	75	13	96	32	11	24	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
946173--946362	40	4.7	40	79	7	150	30	12	25	32	1.92
946223--946362	20	6.9	21	80	10	114	27	11	27	34	1.91
946251--946364	20	5.6	21	83	9	130	24	10	28	36	1.88
946251--946343	21	4.5	21	82	10	97	26	9	25	37	1.87
946173--946360	20	9.3	21	76	11	99	30	12	26	31	1.92
954658--954785	54	2.4	54	90	0	202	25	18	19	35	1.95
955434--955462	14	2.1	14	100	0	58	58	6	20	13	1.58
965764--965831	2	34.5	2	88	2	102	47	1	1	50	1.19

Tables:   1   2   3   4

The End!