genome.fa.s9203.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009203.1 Hibiscus syriacus cultivar Beakdansim tig00112789_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  338692

Tables:   1   2   

This is table  2  of  2  ( 181 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
264305--264598	76	3.9	76	93	3	497	22	20	22	35	1.96
264533--264645	45	2.5	45	91	4	174	22	20	22	35	1.96
264184--264991	272	3.0	273	96	1	1482	21	20	21	35	1.96
264577--264870	76	3.9	76	95	1	531	21	21	21	35	1.96
264804--264917	45	2.5	45	91	2	183	21	21	21	35	1.96
264729--265105	121	3.1	121	95	1	677	22	21	21	35	1.96
264849--264991	76	1.9	74	92	2	241	21	20	21	36	1.95
264925--265039	45	2.5	45	91	4	185	21	22	21	33	1.97
264970--265252	76	3.7	76	90	2	453	22	20	21	35	1.96
265383--265503	3	39.7	3	86	6	127	38	0	1	59	1.07
266908--266946	3	13.0	3	94	0	69	33	2	0	64	1.08
267145--267177	2	17.5	2	87	12	52	45	0	0	54	0.99
267143--267177	9	4.0	9	92	7	63	45	0	0	54	0.99
267249--267286	17	2.2	17	95	0	67	44	0	0	55	0.99
272528--272597	34	2.1	32	84	10	88	22	28	15	32	1.95
273060--273099	19	2.1	19	95	0	71	17	27	35	20	1.95
273069--273107	19	2.1	19	85	4	53	17	33	25	23	1.96
273972--274019	24	2.0	24	87	0	69	41	4	2	52	1.32
275323--275347	2	12.5	2	100	0	50	48	0	0	52	1.00
275788--275834	24	1.9	25	86	4	69	38	10	21	29	1.87
279522--279706	59	3.1	61	74	11	150	31	22	5	39	1.78
279522--279708	60	3.1	58	75	10	164	32	22	5	39	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
279817--279932	60	1.9	61	85	1	162	37	5	25	31	1.78
279817--279990	60	2.9	59	81	7	156	40	5	23	29	1.78
280702--280746	21	2.1	21	88	8	65	44	8	17	28	1.79
281865--281985	59	2.1	59	80	3	136	37	12	16	33	1.86
286478--286577	50	2.0	50	100	0	200	50	6	24	20	1.70
286488--286568	27	3.1	27	60	20	64	53	4	22	19	1.64
288970--289052	36	2.3	35	83	6	103	18	37	10	33	1.85
290102--290184	43	1.9	44	85	2	114	44	22	18	14	1.86
290392--290438	2	23.5	2	87	8	69	51	0	4	44	1.21
293671--293743	37	2.0	36	82	12	87	63	0	1	35	1.04
294498--294547	16	3.3	16	67	16	52	16	12	14	58	1.64
294477--294547	29	2.4	29	95	0	124	15	12	14	57	1.65
308795--308835	19	2.1	20	86	4	57	39	0	2	58	1.11
311681--311735	3	18.3	3	88	7	85	34	1	0	63	1.05
313547--313614	34	2.0	34	88	0	100	45	10	5	38	1.63
317754--317783	2	15.0	2	100	0	60	50	0	0	50	1.00
320907--321105	98	2.0	101	86	2	278	37	20	11	30	1.88
327912--328004	21	4.6	20	78	4	96	38	18	24	18	1.92
327909--328004	41	2.3	41	98	0	183	39	17	23	18	1.92
327912--328004	20	4.6	20	78	4	96	38	18	24	18	1.92
327931--328066	41	3.3	41	81	5	123	38	20	21	19	1.94
327993--328087	20	4.7	20	77	5	82	34	24	17	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328605--328671	19	3.5	19	83	2	80	49	23	16	10	1.77
328667--328831	19	9.1	19	73	15	134	13	24	19	43	1.87
328672--328806	33	3.9	33	87	5	144	12	24	20	42	1.87
328785--328831	20	2.3	20	75	13	51	14	25	12	46	1.80
330819--330941	42	2.9	42	79	7	115	23	35	17	22	1.95
330875--330941	21	3.2	21	66	6	55	23	35	20	19	1.95
332293--332328	14	2.6	14	95	0	63	30	0	25	44	1.54
332504--332601	19	5.8	18	65	22	68	13	24	19	42	1.87
332509--332601	33	2.8	33	96	1	170	12	24	19	43	1.86
334870--334894	12	2.1	12	100	0	50	0	28	0	72	0.86
336184--336221	19	2.0	19	89	0	58	42	21	23	13	1.88
336338--336374	14	2.6	14	86	0	56	48	21	0	29	1.50
336925--336961	14	2.6	14	86	0	56	48	21	0	29	1.50
335973--338591	585	4.5	589	96	2	4859	35	19	12	32	1.89
337512--337548	14	2.6	14	86	0	56	48	21	0	29	1.50
338093--338129	14	2.6	14	86	0	56	48	21	0	29	1.50
338547--338612	19	3.7	19	86	13	97	13	21	18	46	1.83

Tables:   1   2

The End!