genome.fa.s9214.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009214.1 Hibiscus syriacus cultivar Beakdansim tig00112801_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  549473

Tables:   1   2   3   

This is table  2  of  3  ( 353 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
236993--237194	105	1.9	103	97	2	386	25	15	42	16	1.88
243548--243586	18	2.2	18	81	4	53	17	28	23	30	1.97
246369--246406	2	19.0	2	94	0	67	50	0	2	47	1.15
259691--259758	29	2.3	30	80	9	70	26	7	1	64	1.28
279004--279096	48	1.9	48	91	4	152	29	15	7	48	1.72
279385--279421	5	7.4	5	100	0	74	18	0	0	81	0.70
279450--279517	5	13.8	5	75	3	66	23	2	1	72	1.07
279450--279501	20	2.6	20	96	0	95	26	0	1	71	0.97
280631--280655	13	1.9	13	100	0	50	64	0	0	36	0.94
282038--282081	22	2.0	23	86	4	63	45	0	0	54	0.99
282025--282110	31	2.7	33	81	15	101	48	0	0	51	1.00
282038--282186	54	2.6	59	74	21	136	48	0	1	49	1.09
282074--282123	23	2.2	22	85	3	64	54	0	2	44	1.11
282042--282219	56	3.4	53	76	17	149	51	0	1	47	1.08
282135--282194	27	2.3	25	80	11	66	55	0	1	43	1.10
282132--282203	19	3.9	19	72	15	62	54	0	1	44	1.08
282180--282242	23	2.7	23	85	5	72	50	1	0	47	1.10
282542--282581	15	2.7	15	100	0	80	42	17	5	35	1.71
313714--313751	17	2.2	17	86	9	51	7	28	2	60	1.38
325631--325741	55	2.0	55	92	0	186	39	13	23	23	1.90
334871--334899	2	14.5	2	100	0	58	0	48	0	51	1.00
340261--340375	60	1.9	60	82	3	142	33	20	2	43	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
341105--341242	21	6.7	21	69	6	59	34	25	18	21	1.96
341210--341578	20	18.5	20	84	4	449	34	26	18	20	1.95
342261--342307	24	2.0	24	87	8	69	25	14	21	38	1.92
342481--342505	12	2.1	12	100	0	50	72	0	28	0	0.86
344779--345083	19	17.4	19	78	17	349	46	18	20	14	1.83
344779--345105	33	9.5	33	76	15	170	46	18	21	14	1.84
344779--345083	52	5.8	51	88	8	320	46	18	20	14	1.83
344849--345083	71	3.3	71	85	12	356	46	17	21	14	1.83
345112--345213	19	5.6	19	85	12	151	14	23	17	44	1.86
345319--345355	14	2.6	14	91	0	65	45	21	0	32	1.52
347335--347390	14	3.7	14	80	17	67	44	23	21	10	1.83
347279--347407	32	3.8	33	82	8	143	46	24	17	11	1.81
347279--347412	19	7.6	19	77	15	110	45	23	18	11	1.83
347408--347535	19	7.3	19	73	19	116	8	17	28	45	1.78
347408--347498	32	2.8	34	90	6	143	7	18	28	45	1.77
347579--348143	93	6.1	93	99	0	1107	46	18	12	22	1.83
347579--348143	185	3.0	186	98	0	1107	46	18	12	22	1.83
349803--349892	14	5.7	14	74	23	81	42	23	25	8	1.83
349795--349909	33	3.5	33	95	0	212	45	20	24	9	1.81
349802--349914	19	6.8	18	72	23	88	43	22	24	9	1.83
349933--350026	20	4.8	19	74	12	84	11	25	20	42	1.86
350106--350176	33	2.2	33	92	0	115	47	18	22	11	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
350358--350412	22	2.5	22	81	0	74	20	16	40	23	1.91
350556--350748	20	9.6	20	80	5	210	19	19	25	35	1.95
350556--350748	60	3.2	60	81	0	242	19	19	25	35	1.95
350845--350882	19	2.0	20	94	5	69	10	15	23	50	1.75
351647--351745	21	4.8	20	72	6	72	36	23	19	21	1.95
351713--351885	20	8.6	20	84	6	215	35	27	19	17	1.94
352263--352333	33	2.2	33	94	0	124	11	23	16	47	1.79
352413--352489	21	3.7	21	81	6	102	48	16	22	12	1.80
352474--352530	14	3.7	14	75	20	60	43	22	24	8	1.81
352467--352546	33	2.4	33	95	0	142	47	22	21	8	1.78
352542--352648	19	6.1	19	70	22	81	11	23	17	47	1.80
352564--352620	14	3.7	14	72	20	51	10	24	21	43	1.83
352545--352640	33	2.9	33	92	1	156	11	22	18	46	1.81
352604--352646	20	2.2	20	91	0	68	13	20	11	53	1.71
354561--354617	14	3.7	14	72	20	51	43	24	22	8	1.81
354575--354655	14	4.8	18	69	26	61	46	27	18	7	1.75
354543--354662	33	3.6	33	91	1	168	46	26	17	9	1.78
354592--354650	14	3.9	14	76	20	64	47	28	16	6	1.72
354575--354662	19	5.2	18	70	25	75	47	27	17	7	1.75
354667--354834	19	9.3	19	76	13	158	10	19	23	47	1.79
354667--354834	33	4.7	38	81	7	167	10	19	23	47	1.79
356755--356790	14	2.6	14	95	0	63	33	0	22	44	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
356897--356995	19	5.4	19	83	14	136	45	17	23	14	1.84
356897--357014	53	2.2	53	96	3	220	44	17	24	13	1.85
357010--357227	53	4.1	52	87	10	302	13	22	17	46	1.83
357004--357213	72	2.9	71	84	9	248	14	21	17	45	1.84
357081--357227	33	4.2	33	79	13	179	13	21	18	46	1.83
359689--359735	24	2.0	24	87	8	69	38	21	14	25	1.92
360421--360649	20	11.4	20	87	1	253	18	17	26	37	1.92
363525--363562	20	2.0	20	89	5	60	31	10	5	52	1.58
369310--369367	20	2.8	20	72	15	55	51	5	5	37	1.46
370211--370256	20	2.2	21	92	3	76	52	13	28	6	1.65
370957--370997	22	1.9	22	85	5	57	39	0	2	58	1.11
371624--371695	37	2.0	37	83	8	94	47	5	0	47	1.25
372416--372741	162	2.0	163	99	0	645	30	14	21	34	1.93
373343--373419	29	2.7	29	95	0	136	24	27	33	14	1.94
375248--375320	37	2.0	38	83	5	96	53	1	2	42	1.23
375861--375908	20	2.4	20	96	0	87	14	25	25	35	1.94
377728--377775	24	2.0	24	100	0	96	41	12	37	8	1.73
380977--381270	35	8.3	35	76	10	147	42	2	7	46	1.47
381067--381311	73	3.4	72	81	10	256	42	2	7	47	1.45
381019--381303	35	7.9	35	75	12	213	43	2	7	46	1.47
381315--381378	4	17.0	4	78	15	66	23	3	1	71	1.08
381335--381384	25	2.0	24	92	3	82	22	4	2	72	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
381526--381556	16	2.0	15	93	6	53	19	41	25	12	1.87
384241--384285	19	2.4	19	92	3	74	11	13	8	66	1.44
387538--388420	80	10.9	82	74	10	782	29	26	21	22	1.99
387534--388470	325	2.9	330	93	4	1629	29	25	21	22	1.99
387538--388470	165	5.7	165	93	4	1623	29	25	21	22	1.99
388409--388531	61	2.0	61	100	0	246	26	26	22	24	2.00
388245--388696	226	2.0	226	92	0	762	29	25	21	23	1.99
388470--388702	82	2.8	81	75	6	279	30	24	21	23	1.99
389340--389491	33	4.5	33	75	10	121	42	3	7	45	1.51
389501--389626	33	3.6	35	86	9	170	39	0	7	51	1.37
389501--389633	68	1.9	69	88	7	200	40	1	7	50	1.40
389578--389617	21	2.0	21	90	5	64	35	0	7	57	1.27
389656--389724	4	17.5	4	77	16	65	23	2	1	72	1.06
389873--389903	16	2.0	15	93	6	53	19	41	25	12	1.87
391529--391572	20	2.3	19	88	7	63	72	0	2	25	0.96
393129--393171	18	2.4	18	96	0	77	48	23	2	25	1.62
401559--401605	13	3.7	13	77	5	51	68	12	2	17	1.31
401727--401767	21	2.0	21	95	0	73	21	41	9	26	1.84
402048--402110	33	1.9	33	83	6	83	25	20	39	14	1.90
403850--403901	9	6.1	9	76	13	56	59	1	1	36	1.19
403852--403908	16	3.5	16	88	4	78	59	1	1	36	1.18
404814--404874	20	3.1	19	84	13	79	55	11	14	18	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
404616--405088	181	2.6	182	88	0	678	42	13	16	27	1.85
405018--405060	20	2.3	19	88	11	63	51	11	16	20	1.75
407283--407347	21	3.1	21	93	0	103	41	10	30	16	1.83
407381--407446	33	2.0	33	90	0	105	28	0	48	22	1.51
409225--409273	19	2.6	19	96	0	89	32	2	10	55	1.45
409386--410327	201	4.7	200	95	0	1652	35	15	18	30	1.92
409386--410327	401	2.3	400	95	0	1677	35	15	18	30	1.92
411856--411955	6	16.7	6	86	0	101	39	6	33	22	1.78
411873--411955	36	2.3	36	97	0	157	38	4	33	22	1.76
411856--411955	12	8.3	12	89	0	137	39	6	33	22	1.78

Tables:   1   2   3