genome.fa.s9214.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009214.1 Hibiscus syriacus cultivar Beakdansim tig00112801_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  549473

Tables:   1   2   3   

This is table  3  of  3  ( 353 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
413165--413737	183	3.1	183	97	0	1083	34	14	16	34	1.89
416578--416650	23	3.2	23	90	0	110	34	5	23	36	1.78
417068--417140	23	3.2	23	90	0	110	35	5	20	38	1.76
416232--418032	490	3.7	490	96	0	3279	41	7	10	40	1.68
417558--417630	23	3.2	23	92	0	119	34	5	21	38	1.77
443183--443230	23	2.1	23	92	0	78	52	0	8	39	1.32
443748--443794	25	2.0	23	83	8	58	29	23	19	27	1.98
444460--444505	23	2.0	23	95	0	83	19	21	23	34	1.96
444530--444578	24	2.0	24	92	0	80	18	22	26	32	1.97
448044--448196	20	7.6	20	76	3	137	38	22	18	20	1.93
448021--448195	81	2.2	80	85	6	228	37	23	17	21	1.94
448021--448195	40	4.3	40	86	5	228	37	23	17	21	1.94
448760--448850	20	4.6	20	81	9	105	51	18	16	13	1.76
448760--448887	19	6.8	19	75	12	77	50	21	17	11	1.77
448884--448929	19	2.4	19	85	0	56	15	21	17	45	1.85
448893--448930	19	2.0	19	89	0	58	13	26	15	44	1.83
448896--448960	33	1.9	34	84	3	87	12	26	21	40	1.88
448925--448980	20	2.8	20	86	10	87	14	25	21	39	1.91
452432--452465	14	2.4	14	95	0	59	35	0	20	44	1.52
452572--452670	19	5.7	18	69	24	54	45	22	19	13	1.84
452572--452665	33	2.8	32	87	3	125	44	22	19	13	1.85
452635--452680	19	2.4	19	96	0	83	45	26	15	13	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
452680--452773	33	2.8	33	93	0	161	13	23	18	44	1.85
452778--452812	14	2.5	14	95	0	61	14	20	20	45	1.85
452767--452860	33	2.8	33	78	3	107	14	21	22	41	1.89
455180--455206	3	9.0	3	100	0	54	0	33	0	66	0.92
455381--455434	24	2.2	24	93	0	90	40	20	18	20	1.91
455381--455448	24	2.8	24	84	0	64	38	20	17	23	1.93
456283--456542	20	12.9	19	75	11	164	20	18	24	36	1.94
456289--456519	40	5.7	40	88	4	288	19	19	24	37	1.94
456289--456500	60	3.5	60	81	5	250	18	18	24	38	1.93
457987--458039	7	8.2	6	80	17	54	69	0	1	28	0.99
457987--458039	3	16.3	3	81	18	54	69	0	1	28	0.99
457994--458039	10	4.4	10	84	10	65	71	0	0	28	0.86
458499--458606	37	2.9	37	92	0	180	34	12	12	40	1.81
459286--459398	34	3.4	34	81	10	153	35	10	15	38	1.83
459286--459379	30	3.0	30	85	6	125	35	10	15	38	1.83
459386--459951	37	16.1	37	76	14	511	40	14	18	26	1.89
459451--459951	37	14.1	36	79	11	518	40	14	18	26	1.89
459645--459748	15	5.4	21	64	28	63	41	14	19	25	1.89
459451--459951	212	2.4	210	91	3	817	40	14	18	26	1.89
459480--459749	139	1.9	138	88	3	409	41	14	17	26	1.88
459682--459747	21	3.4	21	70	25	72	40	12	21	25	1.88
459857--459919	21	3.3	21	68	25	66	41	9	20	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
459853--459976	36	3.4	35	86	5	158	38	12	20	28	1.89
464739--464775	7	5.0	7	90	9	56	70	0	0	29	0.88
465233--465340	37	2.9	37	90	0	153	32	13	12	40	1.83
466819--466847	11	2.5	12	88	11	51	37	0	0	62	0.96
470019--470081	32	2.0	32	93	0	108	23	11	14	50	1.74
470818--470854	19	1.9	19	88	0	56	32	27	16	24	1.96
471769--471822	24	2.2	24	93	0	90	20	18	20	40	1.91
474069--474103	18	1.9	18	94	0	61	54	25	2	17	1.57
474161--474443	140	2.0	140	96	0	521	28	13	14	43	1.83
474414--474584	20	8.9	20	78	7	192	33	20	18	27	1.96
474414--474623	40	5.6	38	74	14	159	35	20	18	25	1.95
474752--474870	36	3.2	36	68	15	105	51	16	3	28	1.61
474797--474833	14	2.6	14	100	0	74	48	21	0	29	1.50
474751--474898	77	1.9	79	95	2	273	52	16	2	28	1.58
476283--476351	21	3.3	21	73	4	68	20	18	37	23	1.94
476879--476940	20	3.1	20	81	9	56	50	22	12	14	1.77
476907--476974	20	3.5	19	91	4	100	35	25	23	16	1.95
476979--477032	19	2.8	19	80	0	63	48	20	16	14	1.81
477110--477156	20	2.3	20	92	0	76	19	19	25	36	1.95
479066--479175	20	5.8	20	74	14	90	48	21	17	12	1.80
479124--479186	20	3.2	19	82	6	72	39	23	19	17	1.92
479561--479611	22	2.3	22	93	0	84	23	13	41	21	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
479573--479617	22	2.0	22	95	0	81	22	15	42	20	1.89
479778--479849	20	3.6	20	79	7	74	26	20	23	29	1.99
479875--479911	19	1.9	19	100	0	74	24	16	27	32	1.96
491192--491331	36	3.9	35	81	6	158	37	17	24	21	1.94
491187--491331	71	2.0	72	85	6	197	38	16	24	20	1.92
495276--495323	19	2.5	19	93	0	78	22	18	8	50	1.74
496172--496206	5	6.8	5	93	6	61	20	37	22	20	1.95
496688--496735	19	2.5	19	93	0	78	22	18	8	50	1.74
498232--498261	11	2.9	10	95	5	51	20	23	36	20	1.95
498232--498261	5	5.8	5	92	7	51	20	23	36	20	1.95
498232--498261	16	1.9	15	93	6	51	20	23	36	20	1.95
499543--499595	21	2.5	21	84	0	70	20	26	18	33	1.96
499585--499711	20	6.3	20	82	3	148	37	18	19	24	1.94
503023--503093	20	3.5	20	79	5	81	36	23	19	19	1.95
504689--504800	42	2.7	42	76	2	109	23	19	36	20	1.95
505193--505247	24	2.3	24	100	0	110	18	3	25	52	1.61
505304--505477	20	9.4	20	77	16	160	40	20	19	19	1.92
505364--505459	34	2.8	33	80	3	111	41	19	19	18	1.90
505503--505624	34	3.4	34	77	16	129	18	20	20	40	1.92
505528--505647	20	6.3	20	82	11	153	20	20	20	38	1.94
505503--505647	74	2.0	74	91	0	236	19	20	20	40	1.92
507497--507563	20	3.4	20	85	2	91	49	20	16	13	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
507576--507631	20	2.8	20	83	0	76	21	19	21	37	1.94
508198--508312	20	5.7	20	75	4	113	23	18	17	40	1.91
508198--508308	41	2.7	41	81	0	123	23	18	16	42	1.89
508308--508354	21	2.2	21	92	0	76	36	14	27	21	1.93
512200--513247	134	7.8	134	83	4	1145	30	18	20	30	1.97
513727--514112	206	1.9	208	86	3	555	37	18	14	29	1.91
516045--516103	24	2.5	24	91	0	91	38	15	25	20	1.91
523345--523405	14	4.3	13	74	15	50	13	0	29	57	1.36
523345--523409	28	2.3	29	89	2	96	15	0	30	53	1.42
523339--523383	21	2.1	21	84	8	56	13	0	26	60	1.34
523359--523419	29	2.1	28	87	3	86	19	0	27	52	1.46
523366--523449	36	2.3	36	86	10	118	17	0	28	53	1.44
523359--523427	29	2.4	29	83	7	70	18	0	27	53	1.45
532932--533047	32	3.6	32	91	0	187	32	13	11	42	1.80
533411--533613	9	22.6	9	75	4	140	18	2	32	46	1.64
536430--536507	38	2.0	39	90	2	122	12	8	34	43	1.74
536238--536748	254	2.0	250	90	5	803	23	12	28	36	1.90
536672--536745	38	2.0	38	91	2	123	12	10	37	39	1.78
537280--537325	18	2.7	17	93	6	76	28	30	6	34	1.82
537527--537572	20	2.3	20	80	0	56	56	0	0	43	0.99
537603--537688	32	2.7	32	74	0	91	45	3	3	47	1.36
542569--542650	36	2.3	36	89	0	128	21	36	6	35	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
543044--543076	7	4.6	7	92	7	57	0	30	57	12	1.35
543050--543110	7	8.6	7	91	8	81	0	27	59	13	1.35
543108--549469	7	929.7	7	89	6	4264	9	7	47	36	1.63

Tables:   1   2   3

The End!