Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009233.1 Hibiscus syriacus cultivar Beakdansim tig00112852_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  663203

Tables:   1   2   3   

This is table  3  of  3  ( 300 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
534929--534999
33
2.2
33
92
0
115
47
18
22
11
1.80
535181--535235
22
2.5
22
81
0
74
20
16
40
23
1.91
535382--535474
20
4.7
20
89
2
134
18
19
29
33
1.95
535442--535618
20
8.8
20
70
11
94
18
16
26
38
1.91
535461--535563
21
5.0
21
76
5
84
23
16
24
35
1.95
535461--535618
42
3.9
41
69
15
112
18
16
25
38
1.92
537435--537781
181
1.9
180
80
5
405
25
24
17
32
1.96
542980--543027
23
2.1
23
84
0
60
37
12
16
33
1.86
543373--543438
25
2.6
25
75
0
78
42
12
9
36
1.74
544664--544711
25
1.9
25
95
0
87
14
16
41
27
1.87
554465--554496
15
2.1
16
94
5
57
6
25
18
50
1.70
555247--555280
16
2.1
16
94
0
59
32
26
8
32
1.87
556128--556472
179
1.9
180
82
4
428
25
25
17
32
1.97
563982--564034
3
18.0
3
84
3
72
62
1
3
32
1.24
564189--564471
43
6.5
42
72
12
178
24
19
30
25
1.98
564231--564511
129
2.2
130
90
0
438
24
19
30
25
1.98
564540--564593
28
1.9
28
85
7
74
50
16
12
20
1.78
564931--564968
15
2.5
15
95
0
67
50
5
21
23
1.69
565125--565324
62
3.2
63
74
18
202
42
11
12
34
1.78
565275--565343
28
2.5
28
90
4
104
43
14
7
34
1.73
565443--565554
29
4.1
25
76
15
89
47
14
8
29
1.74
565458--565556
29
3.6
29
86
5
116
46
15
9
29
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
566197--566242
4
12.2
4
82
13
62
23
0
21
54
1.45
566199--566234
18
2.1
17
94
5
63
22
0
22
55
1.44
574160--574212
3
18.0
3
84
3
72
62
1
3
32
1.24
580418--580522
42
2.3
47
76
15
130
21
13
19
45
1.84
585092--585134
22
2.0
22
86
4
61
18
16
27
37
1.92
586760--586789
15
2.0
15
93
0
51
26
20
3
50
1.64
594458--594494
18
2.1
18
89
0
56
29
13
2
54
1.53
595016--595451
122
3.6
121
92
2
678
38
15
20
25
1.91
595754--595795
16
2.6
16
88
0
66
47
16
19
16
1.83
596330--596368
17
2.4
16
83
8
51
69
0
7
23
1.14
600556--600901
180
1.9
180
82
4
430
25
25
17
31
1.97
604316--604736
225
1.9
225
96
0
779
29
20
22
27
1.98
607465--607508
23
2.0
23
86
8
65
18
29
15
36
1.92
608129--608217
35
2.5
36
90
1
135
47
15
8
28
1.76
610323--610414
42
2.2
42
90
3
141
21
11
22
43
1.85
615036--615073
13
2.9
13
88
7
51
52
0
2
44
1.14
624722--624970
123
2.0
123
96
0
462
28
21
12
37
1.90
625632--625675
16
2.7
16
85
3
52
54
0
0
45
0.99
625631--625703
37
2.0
37
86
5
103
50
0
0
49
1.00
625638--625725
41
2.1
43
85
8
119
48
0
0
51
1.00
625773--625836
24
2.5
26
75
17
71
48
1
0
50
1.10
625913--625947
14
2.5
14
95
0
61
57
2
0
40
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
626503--626538
2
18.0
2
100
0
72
50
0
0
50
1.00
630181--630224
20
2.3
19
81
11
54
47
6
22
22
1.75
630370--630441
37
2.0
37
86
2
101
47
4
1
47
1.30
633169--633202
14
2.3
15
90
5
52
35
5
0
58
1.22
637128--637153
2
13.0
2
100
0
52
50
0
0
50
1.00
644124--644190
22
3.0
22
93
0
116
13
20
47
17
1.81
644185--644283
9
10.3
9
77
10
81
29
27
27
16
1.97
644210--644284
29
2.5
31
89
8
120
29
26
26
17
1.97
644185--644283
19
5.2
19
76
17
80
29
27
27
16
1.97
651371--651401
7
4.4
7
100
0
62
25
29
29
16
1.96
651398--651455
5
10.8
5
78
14
62
6
22
51
18
1.70
651391--651455
22
3.0
22
100
0
130
9
23
49
18
1.76
651452--651549
9
10.3
9
77
12
81
29
27
26
16
1.97
651466--651530
10
6.8
10
76
16
50
29
29
24
16
1.97
651475--651550
29
2.5
31
89
8
122
30
26
26
17
1.97
653082--653107
2
13.0
2
100
0
52
50
0
0
50
1.00

Tables:   1   2   3

The End!