genome.fa.s9246.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009246.1 Hibiscus syriacus cultivar Beakdansim tig00112887_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88343

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8329--8403	35	2.1	35	92	0	123	42	24	0	33	1.55
9826--9878	21	2.5	21	84	0	70	20	26	18	33	1.96
10748--10807	24	2.5	24	83	0	84	25	18	18	38	1.93
13316--13370	19	2.8	19	83	2	65	38	21	21	18	1.94
13323--13473	19	8.8	17	69	23	77	44	19	23	12	1.85
13361--13448	14	5.6	14	70	23	59	44	19	25	11	1.84
13343--13467	33	3.8	33	96	0	223	46	18	23	12	1.82
13479--13558	33	2.4	33	87	0	115	10	18	22	48	1.77
13665--13701	14	2.6	14	91	0	65	45	21	0	32	1.52
15051--15117	21	3.2	21	68	4	55	19	20	35	23	1.95
15051--15173	42	2.9	41	79	7	113	22	18	36	21	1.95
15570--15715	19	7.8	19	78	10	149	47	21	19	11	1.81
15570--15715	39	3.9	38	81	10	140	47	21	19	11	1.81
15721--15798	20	4.0	20	88	3	122	6	15	28	50	1.68
15894--16269	94	4.1	94	92	2	593	47	18	11	22	1.81
17970--18065	20	5.2	20	70	21	82	46	18	22	11	1.81
17968--18089	33	3.5	33	84	7	145	46	20	22	9	1.80
18021--18072	14	3.4	14	72	23	50	44	23	25	7	1.79
18104--18195	33	2.8	33	88	0	130	11	21	17	48	1.79
18155--18220	19	3.4	19	79	6	62	12	19	22	45	1.83
18767--18840	20	3.6	21	87	3	107	20	21	20	37	1.94
18769--18862	41	2.3	41	83	0	107	24	20	21	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20213--20265	21	2.5	22	90	3	81	30	7	18	43	1.78
20331--28978	650	13.1	647	74	12	5652	36	17	18	27	1.93
24734--24783	15	3.3	15	85	0	73	16	20	32	32	1.94
25456--28978	650	5.4	650	94	0	6048	37	19	17	25	1.93
29402--29475	2	36.5	2	94	2	130	48	1	1	48	1.18
29970--30076	45	2.4	45	84	6	128	27	15	21	35	1.94
30016--30153	64	2.2	64	84	5	172	28	18	18	34	1.95
32917--33023	45	2.4	45	85	6	137	26	15	22	35	1.94
32963--33100	64	2.2	64	85	5	181	28	19	18	33	1.96
33872--60438	650	40.9	650	92	0	43416	37	19	17	25	1.93
62105--62179	33	2.3	32	76	10	82	56	1	2	40	1.22
62334--62374	15	2.7	15	82	10	57	60	0	0	39	0.96
62319--62433	19	5.9	19	72	20	80	56	0	2	40	1.19
62326--62431	20	5.4	19	70	24	69	55	0	2	40	1.21
62410--62457	22	2.2	22	81	7	53	56	2	0	41	1.11
62427--62500	21	3.4	21	76	10	60	58	1	0	40	1.07
62411--62487	33	2.4	33	78	10	79	57	1	0	41	1.07
63433--63478	20	2.3	20	88	7	67	43	0	6	50	1.28
63441--63479	20	2.0	20	95	5	71	38	0	5	56	1.22
64425--64525	22	4.5	22	71	7	94	38	0	9	51	1.35
64332--64480	15	9.5	15	83	11	165	47	0	2	50	1.12
64460--64792	32	11.4	32	70	26	251	34	0	12	52	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64460--65092	54	11.4	54	74	12	500	34	0	13	52	1.43
64471--65028	134	4.3	127	76	15	523	33	0	13	52	1.44
64541--64814	80	3.5	79	78	15	327	34	0	13	52	1.41
64591--64911	102	3.2	102	86	4	434	33	0	14	52	1.41
64425--65082	257	2.5	252	82	11	656	34	0	13	52	1.43
64662--64756	22	4.2	22	63	21	61	31	0	14	53	1.41
64731--64787	18	3.4	18	69	18	59	33	0	12	54	1.38
64776--64831	22	2.5	22	100	0	112	33	0	14	51	1.42
64794--65077	80	3.5	79	87	8	426	32	0	14	52	1.44
64841--64980	32	4.7	32	77	16	165	34	0	11	53	1.42
64874--64916	22	2.0	22	100	0	86	34	0	13	51	1.42
65040--65082	22	2.0	22	100	0	86	34	0	13	51	1.42
65107--65165	31	1.9	31	92	0	100	42	10	6	40	1.65
65582--65694	42	2.7	41	86	6	140	21	10	14	53	1.70
65872--65925	22	2.3	23	87	6	74	50	0	0	50	1.00
65882--65947	22	3.0	23	82	8	66	46	0	0	53	1.00
65950--66014	23	2.7	23	76	9	67	49	1	1	47	1.20
65990--66057	29	2.4	28	80	12	84	50	0	1	48	1.10
65998--66057	27	2.4	24	78	13	75	50	0	1	48	1.11
66205--66257	27	2.0	27	85	14	74	50	0	0	49	1.00
66387--66476	20	4.5	20	82	10	121	35	8	7	47	1.64
67200--67231	15	2.1	15	100	0	64	25	21	21	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67938--67985	20	2.5	20	90	10	73	31	29	14	25	1.95
68309--68338	15	2.0	15	93	0	51	63	0	10	26	1.26
68681--68741	31	2.0	31	96	0	113	32	22	6	37	1.80
69537--69571	17	2.1	17	100	0	70	57	5	17	20	1.60
72176--72215	20	2.1	19	90	4	62	35	7	32	25	1.84
73797--73829	11	3.0	11	91	8	50	33	0	0	66	0.92
73804--73835	11	2.6	13	80	19	50	28	0	0	71	0.86
74067--74106	21	1.9	21	89	0	62	25	32	30	12	1.92
87648--87701	29	1.9	27	81	7	63	42	5	0	51	1.25
88028--88082	23	2.5	21	82	5	65	34	0	3	61	1.13

Tables:   1

The End!