genome.fa.s9249.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009249.1 Hibiscus syriacus cultivar Beakdansim tig00112890_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41795

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
207--352	20	7.6	20	81	10	171	39	21	19	19	1.93
210--315	54	2.0	54	90	3	169	41	20	20	16	1.90
397--443	20	2.3	20	88	0	67	21	19	23	36	1.95
481--539	20	3.0	20	92	0	91	20	20	20	38	1.93
2442--2477	14	2.6	14	90	0	54	30	0	22	47	1.52
2570--2609	20	2.0	20	85	0	53	40	20	22	17	1.92
2585--2652	33	2.1	33	88	0	100	42	19	23	14	1.88
2648--2730	19	4.3	19	82	11	107	19	21	24	34	1.96
2642--2730	39	2.3	38	85	11	119	20	22	23	33	1.97
6009--6165	20	7.8	20	82	8	119	22	21	20	36	1.95
6019--6165	40	3.7	40	86	6	199	21	20	20	37	1.95
6019--6165	60	2.4	60	83	9	190	21	20	20	37	1.95
6163--6202	21	1.9	21	89	0	62	42	17	22	17	1.89
6563--6742	38	4.9	37	78	10	138	43	4	6	45	1.50
6563--6719	38	4.3	35	82	6	145	43	4	5	46	1.45
7198--7224	7	3.9	7	100	0	54	29	14	11	44	1.80
9879--9937	17	3.4	17	66	25	50	38	0	5	55	1.22
9877--9972	36	2.7	37	82	6	117	42	0	5	52	1.24
10489--10547	27	2.2	27	87	6	84	28	5	0	66	1.13
10531--10563	13	2.4	14	90	5	50	30	0	0	69	0.88
10531--10571	14	3.0	14	89	3	57	29	0	0	70	0.87
17913--17955	16	2.7	16	100	0	86	11	11	18	58	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21121--21567	227	2.0	226	92	3	747	45	8	7	38	1.63
21633--21678	20	2.3	19	89	10	74	54	10	17	17	1.70
21799--21845	20	2.4	19	79	10	58	55	8	17	19	1.67
24141--24206	33	2.0	33	87	0	96	28	1	45	24	1.62
25986--26029	19	2.4	19	88	3	63	31	2	6	59	1.36
26112--27729	199	8.1	199	97	0	3010	37	14	15	32	1.88
26112--27729	598	2.7	597	97	0	3055	37	14	15	32	1.88
29186--29253	21	3.4	18	69	21	55	36	8	35	19	1.83
29186--29283	6	16.3	6	80	0	70	36	7	34	21	1.81
29201--29287	3	29.0	3	77	0	84	35	5	34	24	1.79
29189--29279	42	2.2	42	91	0	146	35	7	35	21	1.83
29186--29283	18	5.4	18	78	0	88	36	7	34	21	1.81
30761--31604	184	4.6	184	97	0	1602	34	14	15	34	1.89
30761--31604	366	2.3	367	97	0	1600	34	14	15	34	1.89
34157--34220	23	2.8	23	87	0	92	35	6	20	37	1.78
34157--34229	23	3.2	23	82	7	85	34	5	20	39	1.76
34582--34644	23	2.7	23	90	0	90	36	6	19	38	1.77
34582--34654	23	3.2	23	86	3	85	35	5	19	39	1.75
34798--34862	29	2.2	29	83	5	78	52	4	0	43	1.22
34058--38045	426	9.4	431	97	2	7544	39	8	13	38	1.74
35006--35068	23	2.7	23	90	0	90	36	6	19	38	1.77
35006--35078	23	3.2	23	86	3	85	35	5	19	39	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35649--35716	31	2.2	30	82	12	77	54	4	0	41	1.20
35861--35918	22	2.7	21	84	7	71	37	6	17	37	1.76
35881--35928	22	2.2	22	96	0	87	35	2	16	45	1.59
34058--38034	849	4.7	858	96	3	7465	39	8	13	38	1.74
36277--36346	21	3.2	22	83	6	79	35	5	20	38	1.76
36701--36762	22	2.7	23	85	5	81	37	6	19	37	1.78
36701--36772	23	3.2	23	82	7	76	36	5	19	38	1.75
37127--37188	23	2.7	23	87	2	81	35	6	19	38	1.77
37127--37203	23	3.5	22	84	7	77	35	5	19	40	1.74
37554--37616	23	2.7	23	90	0	90	36	6	19	38	1.77
37554--37626	23	3.2	23	86	3	85	35	5	19	39	1.75
37983--38047	23	2.8	23	90	0	94	35	7	18	38	1.80
38250--38286	18	2.1	18	89	0	56	32	5	10	51	1.60
38242--38288	24	2.0	24	86	0	67	34	4	14	46	1.64
39411--39460	23	2.2	23	100	0	100	26	24	8	42	1.82
39556--39592	18	2.0	19	89	5	58	37	27	29	5	1.79
40028--40059	16	1.9	17	93	6	57	37	6	21	34	1.79

Tables:   1

The End!