genome.fa.s9250.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009250.1 Hibiscus syriacus cultivar Beakdansim tig00112893_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48181

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2464--4058	197	8.1	198	94	3	2699	37	15	15	32	1.88
5513--5580	21	3.4	18	69	21	55	36	8	35	19	1.83
5513--5610	6	16.3	6	80	0	70	36	7	34	21	1.81
5528--5614	3	29.0	3	77	0	84	35	5	34	24	1.79
5516--5606	42	2.2	42	91	0	146	35	7	35	21	1.83
5513--5610	18	5.4	18	78	0	88	36	7	34	21	1.81
7083--7932	184	4.7	184	96	1	1568	35	14	15	34	1.89
10504--10555	23	2.3	23	90	6	79	34	1	19	44	1.62
10914--10976	23	2.7	23	90	0	90	36	6	19	38	1.77
10914--10986	23	3.2	23	86	3	85	35	5	19	39	1.75
11132--11197	30	2.2	30	82	12	75	53	4	0	42	1.21
11342--11404	23	2.7	23	90	0	90	36	6	19	38	1.77
11342--11414	23	3.2	23	86	3	85	35	5	19	39	1.75
11768--11830	23	2.7	23	90	0	90	36	6	19	38	1.77
11768--11840	23	3.2	23	86	3	85	35	5	19	39	1.75
12197--12259	23	2.7	23	90	0	90	36	6	19	38	1.77
12203--12274	23	3.2	21	77	14	56	34	5	18	41	1.73
12623--12685	23	2.7	23	90	0	90	36	6	19	38	1.77
12623--12695	23	3.2	23	86	3	85	35	5	19	39	1.75
13053--13115	23	2.7	23	90	0	90	36	6	19	38	1.77
13053--13125	23	3.2	23	86	3	85	35	5	19	39	1.75
10385--14403	430	9.4	431	98	1	7832	39	8	13	38	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13483--13544	23	2.7	23	87	2	81	35	6	19	38	1.77
13483--13559	23	3.5	22	84	7	77	35	5	19	40	1.74
10385--14403	859	4.7	861	98	1	7828	39	8	13	38	1.74
13913--13975	23	2.7	23	90	0	90	36	6	19	38	1.77
13913--13985	23	3.2	23	86	3	85	35	5	19	39	1.75
14341--14405	23	2.8	23	90	0	94	35	7	18	38	1.80
14609--14645	18	2.1	18	89	0	56	32	5	10	51	1.60
14601--14647	24	2.0	24	86	0	67	34	4	14	46	1.64
15794--15843	23	2.2	23	100	0	100	26	24	8	42	1.82
15941--15979	19	2.0	20	90	5	62	35	25	33	5	1.78
16418--16449	16	1.9	17	93	6	57	37	6	21	34	1.79
23097--23193	47	2.0	48	82	9	119	41	6	12	40	1.68
24954--25051	21	4.7	21	97	0	169	24	22	27	25	2.00
26906--26947	22	2.0	21	90	4	66	26	0	4	69	1.08
36798--36829	14	2.2	15	94	5	57	59	0	9	31	1.29
37853--37908	10	5.5	10	83	12	62	69	0	1	28	0.98
37852--37883	4	8.5	4	86	13	50	75	0	0	25	0.81
38030--38150	42	3.0	41	83	9	146	45	4	3	46	1.41
38048--38318	36	7.3	35	80	8	236	46	6	3	43	1.47
38245--38269	11	2.3	11	100	0	50	44	8	8	40	1.63
38048--38359	74	4.1	71	79	9	257	45	7	3	43	1.49
42038--42139	45	2.2	45	89	5	152	31	8	20	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46280--46870	149	4.0	149	95	3	1049	27	15	20	36	1.93

Tables:   1

The End!