genome.fa.s9268.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009268.1 Hibiscus syriacus cultivar Beakdansim tig00112926_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  304330

Tables:   1   2   

This is table  1  of  2  ( 191 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1026--1055	15	2.0	15	93	0	51	56	0	3	40	1.16
1026--1058	8	4.2	8	84	7	50	57	0	3	39	1.14
8205--8260	27	2.1	27	100	0	112	37	14	33	14	1.86
14260--14317	21	2.5	22	83	13	73	81	0	6	12	0.88
14260--14317	8	7.5	8	88	9	68	81	0	6	12	0.88
14267--14309	14	3.0	14	83	6	59	83	0	2	13	0.74
15230--15470	55	4.4	55	86	2	326	30	15	26	27	1.96
15237--15702	54	8.6	54	82	10	312	30	17	25	26	1.97
15237--15548	163	1.9	163	80	6	364	30	16	26	26	1.97
15355--15774	54	7.7	53	85	7	324	30	19	24	25	1.98
16055--16087	8	4.2	8	88	3	50	60	0	3	36	1.12
19649--19681	12	2.8	12	86	13	50	36	0	60	3	1.12
20612--20666	21	2.5	22	88	5	69	56	16	18	9	1.66
20624--20666	21	2.0	21	95	0	77	55	16	18	9	1.67
24337--24402	24	2.8	24	88	6	91	21	22	25	30	1.99
27778--27846	30	2.2	30	82	15	86	34	5	15	43	1.71
27787--27846	31	2.0	29	90	6	93	33	6	15	45	1.72
27787--27846	29	2.0	30	90	6	95	33	6	15	45	1.72
27928--28027	8	14.0	8	67	24	55	25	34	16	25	1.95
27928--28026	21	4.7	21	83	12	123	24	34	16	25	1.95
27956--28023	13	5.0	13	70	19	50	27	30	16	25	1.96
27928--28121	21	9.8	20	77	13	116	25	31	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28961--29029	30	2.2	30	85	15	95	34	5	17	42	1.73
28970--29029	30	2.0	30	93	6	104	33	6	16	43	1.74
29111--29197	8	12.0	8	70	22	59	25	33	16	25	1.96
29109--29290	21	8.8	21	74	14	78	25	30	17	26	1.97
29160--29291	20	6.8	20	75	13	98	27	28	17	26	1.98
30130--30198	30	2.2	30	85	15	95	34	5	17	42	1.73
30139--30198	30	2.0	30	93	6	104	33	6	16	43	1.74
30280--30379	8	14.0	8	67	24	55	25	34	16	25	1.95
30280--30378	21	4.7	21	83	12	123	24	34	16	25	1.95
30308--30375	13	5.0	13	70	19	50	27	30	16	25	1.96
30280--30473	21	9.8	20	77	13	116	25	31	17	26	1.97
31288--31312	2	12.5	2	100	0	50	52	0	0	48	1.00
34733--34773	22	1.9	21	85	14	57	24	24	26	24	2.00
38194--38255	30	2.1	30	100	0	124	19	22	14	43	1.87
40623--40910	147	2.0	146	91	0	468	39	8	10	41	1.70
41152--41185	3	11.3	3	87	12	52	32	0	0	67	0.91
41154--41179	13	2.0	13	100	0	52	38	0	0	61	0.96
44258--44319	28	2.3	27	83	5	79	51	6	9	32	1.60
47571--47624	20	2.7	21	80	11	60	72	1	7	18	1.17
59213--59254	6	7.0	6	97	0	66	45	16	33	4	1.69
60717--60747	2	15.5	2	100	0	62	51	0	0	48	1.00
63769--63806	19	2.0	19	100	0	76	57	21	15	5	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64846--64872	7	3.9	7	100	0	54	29	11	14	44	1.80
67088--67124	16	2.3	16	95	0	65	27	16	5	51	1.66
69623--69679	29	2.0	29	92	0	96	15	35	31	17	1.92
69697--69721	12	2.1	12	100	0	50	40	8	36	16	1.77
69750--69863	29	3.9	29	78	4	122	16	35	26	21	1.95
69751--69865	58	2.0	58	84	3	151	17	35	26	20	1.95
69879--69941	33	1.9	33	86	0	90	11	38	28	22	1.88
69923--69993	14	5.4	14	76	19	80	8	26	39	25	1.84
69923--69996	24	2.8	27	80	15	84	9	25	39	25	1.86
70036--70093	29	2.0	29	89	0	89	22	27	36	13	1.92
70608--70694	13	6.3	15	73	17	64	58	0	2	39	1.11
70651--70697	14	3.1	15	80	14	53	59	0	2	38	1.09
71339--71384	23	2.0	23	100	0	92	21	26	17	34	1.95
77130--77168	17	2.3	17	90	0	60	28	5	35	30	1.79
79293--79351	28	2.1	28	96	0	109	32	23	15	28	1.95
79293--79337	15	3.1	15	70	23	51	31	22	17	28	1.97
80971--81146	87	2.0	87	98	0	343	19	17	23	39	1.92
91967--92051	43	2.0	43	83	4	109	54	17	3	24	1.59
98065--98102	2	19.0	2	100	0	76	50	0	0	50	1.00
110656--110686	4	7.8	4	92	0	53	22	0	0	77	0.77
112900--112943	23	2.0	21	83	12	54	50	0	0	50	1.00
113091--113182	27	3.4	27	77	15	102	44	0	1	54	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113282--113330	12	4.2	12	75	15	50	51	0	2	46	1.12
113271--113330	24	2.5	22	81	10	66	51	0	1	46	1.10
115974--116002	15	1.9	15	100	0	58	62	0	3	34	1.12
121075--121482	212	1.9	213	96	1	764	35	22	11	30	1.90
125699--125761	31	2.1	28	85	8	81	53	7	7	30	1.58
131372--131410	20	1.9	21	89	5	62	23	5	5	66	1.32
137145--137174	15	2.0	15	93	0	51	70	0	0	30	0.88
137686--137729	18	2.4	19	84	3	63	59	0	2	38	1.10
137686--137729	19	2.4	18	85	14	63	59	0	2	38	1.10
138615--138726	31	3.6	31	93	0	188	41	24	16	16	1.89
140517--140696	98	1.8	98	96	0	333	32	8	18	40	1.81
147701--147743	21	2.0	21	86	0	59	44	4	23	27	1.73
148096--148136	21	2.0	21	85	0	55	65	9	2	21	1.34
149639--149841	31	6.5	31	94	0	352	39	21	18	20	1.92
152595--152655	21	3.2	21	65	29	64	32	3	21	42	1.69
152587--152705	35	3.3	37	86	8	165	32	4	19	43	1.70
157219--157279	21	3.2	21	63	29	55	32	4	19	42	1.73
157211--157329	35	3.3	36	90	5	179	32	5	18	43	1.72
164871--164910	2	20.0	2	100	0	80	50	0	0	50	1.00
171506--171534	14	2.0	15	93	6	51	10	0	89	0	0.48
175127--175175	23	2.1	24	96	3	91	51	8	22	18	1.72
175155--175578	213	2.0	211	98	1	814	40	17	13	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
176417--176465	20	2.4	21	82	3	55	59	6	2	32	1.34
188424--188475	14	4.0	14	73	19	58	11	11	25	51	1.71
188411--188500	24	3.8	24	86	0	108	13	11	20	55	1.68
189299--189389	12	7.9	11	78	7	92	30	20	24	24	1.99
189295--189425	23	5.7	23	87	0	163	27	21	23	27	1.99
189629--189687	16	3.7	16	90	0	91	8	15	23	52	1.70
190574--190604	10	3.1	10	95	0	53	32	32	0	35	1.58
190646--190686	18	2.3	18	91	4	66	29	4	2	63	1.28
190748--190969	111	2.0	111	96	0	408	36	7	10	45	1.67
192960--193028	24	2.8	25	67	20	63	31	5	2	59	1.36
192960--193029	26	2.8	26	69	18	67	31	5	2	60	1.35
193057--193141	35	2.5	33	78	14	91	27	8	10	54	1.63
196368--196485	20	5.8	20	72	14	80	38	21	19	21	1.94
196431--196686	20	12.6	20	73	10	135	39	23	17	19	1.92
196492--196685	40	4.8	41	88	1	284	38	24	18	19	1.93
196778--196865	20	4.4	20	86	2	115	37	23	18	20	1.94
197342--197395	24	2.2	24	93	0	90	20	18	20	40	1.91
197578--197614	14	2.6	14	86	0	56	48	21	0	29	1.50
198965--199072	42	2.6	42	79	5	121	22	17	37	22	1.94
199556--199624	20	3.5	20	91	0	102	36	23	20	20	1.95
199656--199703	19	2.5	19	82	0	60	12	12	27	47	1.77
199672--199796	33	3.8	33	87	2	146	10	20	22	47	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
199705--199836	19	7.4	19	68	21	72	12	20	21	45	1.84
199724--199781	14	3.8	14	75	20	53	10	24	18	46	1.80
199884--200171	94	3.1	93	92	2	450	46	18	12	22	1.81
201842--201931	33	2.5	35	82	14	112	45	16	23	14	1.84
201842--201934	19	5.1	19	71	15	79	45	17	23	13	1.84
201941--202037	20	4.8	20	78	3	97	13	17	17	51	1.76
201946--202037	41	2.3	41	79	7	118	14	17	17	51	1.77
202595--202767	20	8.6	20	80	5	204	18	19	25	36	1.94
202597--202767	40	4.2	41	91	1	274	18	18	25	37	1.94
202776--202828	20	2.7	20	88	5	72	13	20	24	41	1.88

Tables:   1   2