genome.fa.s9268.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009268.1 Hibiscus syriacus cultivar Beakdansim tig00112926_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  304330

Tables:   1   2   

This is table  2  of  2  ( 191 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
202594--202828	40	5.8	40	78	8	190	18	19	25	37	1.94
202597--202828	121	1.9	121	84	3	306	18	18	25	37	1.94
202796--202889	42	2.3	42	76	9	95	21	22	22	34	1.97
202878--202931	20	2.7	19	75	8	63	16	18	31	33	1.93
203459--203587	50	2.5	50	81	8	145	21	27	32	17	1.96
207793--207908	42	2.8	42	97	0	214	17	19	18	43	1.88
208097--208157	22	2.8	23	82	7	65	47	0	0	52	1.00
208123--208220	28	3.6	27	71	16	87	48	1	1	48	1.14
208185--208229	23	2.0	22	82	4	54	42	0	2	55	1.12
208171--208273	28	3.5	29	79	18	108	44	0	1	52	1.18
208439--208508	20	3.5	20	94	0	122	35	12	10	41	1.77
208439--208517	40	2.0	40	87	0	113	35	13	8	41	1.76
208491--208572	15	5.5	15	88	2	121	35	19	7	37	1.80
208491--208572	30	2.8	30	94	1	139	35	19	7	37	1.80
208491--208577	45	2.0	44	93	2	147	33	19	6	40	1.78
220643--220685	12	3.6	12	77	22	54	25	20	32	20	1.97
220638--220685	24	2.0	24	100	0	96	25	20	33	20	1.97
223943--224002	31	1.9	32	83	10	79	75	0	8	16	1.04
224170--224221	2	26.5	2	96	3	97	51	0	0	48	1.00
224248--224283	17	2.1	18	89	5	56	66	11	11	11	1.45
224531--224568	4	10.0	4	83	11	53	73	0	2	23	0.95
229601--229669	16	4.6	16	73	14	74	49	27	11	11	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
230281--230372	39	2.4	39	85	7	116	36	15	0	47	1.45
231497--231589	32	2.9	31	90	7	143	18	16	9	55	1.67
234895--234942	23	2.1	23	92	3	80	62	10	10	16	1.53
234901--234949	23	2.1	23	96	0	89	53	12	14	20	1.73
235542--235599	30	1.9	30	86	6	82	24	6	27	41	1.80
237133--237176	22	2.0	23	86	4	63	6	47	20	25	1.74
237184--237225	22	1.9	22	100	0	84	14	33	28	23	1.94
237229--237290	31	2.0	31	93	0	106	24	37	14	24	1.93
238624--238654	15	2.1	14	94	5	53	45	0	0	54	0.99
243623--243686	22	2.9	22	83	2	92	42	9	25	23	1.84
248780--248817	18	2.1	18	85	9	51	63	0	0	36	0.95
252094--252166	37	2.1	36	92	7	123	49	8	9	32	1.65
253737--253884	45	3.3	45	84	2	183	26	30	20	22	1.98
254907--254956	20	2.5	20	90	0	73	28	18	20	34	1.95
259961--260012	20	2.6	20	96	0	95	38	26	13	21	1.90
260068--260261	20	9.6	20	76	8	76	35	25	19	19	1.95
260064--260261	40	5.0	39	81	4	200	35	26	19	19	1.95
260068--260260	60	3.2	60	83	0	251	35	25	19	19	1.95
260639--260709	33	2.2	33	92	0	115	11	22	18	47	1.80
260830--260883	14	3.6	14	77	18	63	40	24	25	9	1.85
260840--260888	16	3.1	16	72	21	57	44	22	24	8	1.79
260895--260992	19	5.7	19	70	22	81	10	24	22	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
260917--261006	14	5.7	14	74	23	81	8	25	23	42	1.83
260900--261014	33	3.5	33	95	0	212	9	24	20	45	1.81
262682--263128	89	5.1	91	91	7	691	22	11	19	45	1.83
262682--263128	177	2.5	178	90	8	697	22	11	19	45	1.83
263174--263301	19	7.3	19	69	16	87	44	29	17	8	1.78
263209--263301	33	2.8	32	90	4	141	45	29	18	7	1.76
263174--263301	52	2.5	51	72	15	127	44	29	17	8	1.78
263319--263373	14	3.7	14	76	21	58	10	21	23	43	1.84
263302--263391	31	2.8	32	88	5	137	12	20	22	45	1.83
263297--263410	18	6.8	18	74	18	102	11	20	23	44	1.83
265568--265666	19	5.6	19	82	17	133	43	18	23	15	1.87
265695--266001	19	17.4	19	79	16	367	14	20	18	47	1.82
265695--265934	71	3.4	71	85	11	364	14	20	17	47	1.82
265657--266001	142	2.5	139	90	4	518	14	20	18	46	1.84
265695--265973	52	5.2	52	92	4	379	14	21	17	47	1.82
268279--268303	12	2.1	12	100	0	50	0	28	0	72	0.86
268480--268521	22	2.0	21	86	13	59	40	19	16	23	1.91
269199--269586	20	19.5	20	86	4	453	19	19	26	35	1.95
275644--275695	24	2.2	24	100	0	104	42	11	30	15	1.82
295398--295484	35	2.5	34	78	12	88	56	9	6	27	1.56
296075--296112	18	2.1	18	100	0	76	21	21	31	26	1.98
298874--298928	25	2.2	25	83	6	67	36	0	7	56	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
298883--298935	25	2.2	25	82	3	63	41	0	1	56	1.10
299192--299225	17	1.9	17	88	5	50	58	0	2	38	1.13
299640--299664	2	12.5	2	100	0	50	52	0	0	48	1.00
303067--303114	18	2.6	19	84	12	57	35	18	20	25	1.95
303086--303285	64	3.1	61	74	14	172	26	18	23	32	1.97

Tables:   1   2

The End!