genome.fa.s9280.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009280.1 Hibiscus syriacus cultivar Beakdansim tig00112965_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  224400

Tables:   1   

This is table  1  of  1  ( 106 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41--330	80	3.5	81	86	7	399	36	12	22	28	1.91
5786--5838	26	2.0	26	85	0	70	22	15	24	37	1.92
9653--9704	22	2.4	22	83	6	61	11	13	19	55	1.68
11002--11027	7	3.7	7	100	0	52	88	0	0	11	0.52
13960--13989	15	2.0	15	100	0	60	13	26	46	13	1.80
26096--26168	3	24.7	3	97	2	139	67	0	0	32	0.91
26477--26509	18	1.9	17	88	11	50	24	24	27	24	2.00
30906--30940	16	2.1	17	89	5	54	17	2	2	77	1.02
30880--30950	32	2.2	32	80	5	81	18	1	5	74	1.08
34702--34757	27	2.1	27	83	12	71	75	0	19	5	1.00
36666--36833	57	3.0	56	77	13	154	30	8	19	40	1.82
36948--37060	42	2.7	42	78	4	122	30	20	20	29	1.97
37236--37311	39	1.9	39	89	0	116	30	17	17	35	1.92
37350--37487	59	2.3	59	82	2	161	25	23	21	29	1.99
37580--37792	39	5.5	38	83	5	232	32	16	13	37	1.88
37818--37947	59	2.2	57	77	9	127	30	26	15	27	1.96
38917--38964	2	24.0	2	100	0	96	50	0	0	50	1.00
39808--39851	23	1.9	23	86	9	63	13	2	6	77	1.07
39950--40003	23	2.3	23	93	0	90	35	5	14	44	1.69
43022--43185	39	4.2	39	81	3	161	34	23	25	16	1.95
44805--44844	21	1.9	21	90	10	64	35	0	10	55	1.34
50529--50560	17	1.9	17	93	6	57	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50602--50666	30	2.2	29	84	10	80	47	9	1	41	1.45
54585--54660	16	4.8	16	73	15	50	27	2	1	68	1.11
54618--54660	23	1.9	23	90	4	70	20	2	0	76	0.89
55875--55928	21	2.5	21	81	6	54	68	0	3	27	1.06
58324--58552	114	2.0	114	89	0	350	30	13	32	23	1.94
69488--69538	22	2.3	22	83	10	59	19	11	1	66	1.33
71574--71613	20	1.9	22	85	10	57	27	20	7	45	1.78
73823--73911	44	2.0	44	84	0	115	34	17	15	31	1.92
73884--74362	129	3.7	129	90	0	726	36	15	19	27	1.93
73884--74362	257	1.9	257	90	0	762	36	15	19	27	1.93
74215--74526	164	1.9	164	87	1	464	39	14	18	27	1.90
74379--74679	129	2.3	129	86	2	410	38	15	19	26	1.92
74087--74655	293	1.9	292	92	0	958	38	15	18	27	1.91
75601--75649	19	2.5	20	86	6	64	71	0	4	24	1.03
77988--78048	5	11.8	5	75	13	52	70	3	4	21	1.21
80258--80303	19	2.3	20	88	3	67	76	0	4	19	0.96
80887--81014	65	2.0	65	87	6	188	53	16	2	27	1.55
95673--95725	18	3.0	17	78	8	61	18	7	1	71	1.19
97883--97978	39	2.5	39	86	3	131	27	23	28	20	1.99
102008--102138	45	2.9	43	80	9	156	40	11	4	43	1.61
102553--102602	2	25.0	2	100	0	100	50	0	0	50	1.00
102905--102940	14	2.6	14	95	0	63	11	13	16	58	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103117--103153	14	2.6	14	95	0	65	5	8	21	64	1.40
104450--104510	28	2.1	29	84	6	79	49	13	19	18	1.79
105867--106070	83	2.5	83	81	0	230	25	18	25	30	1.98
109777--109819	17	2.6	17	85	3	52	32	18	18	30	1.95
112949--113103	82	1.9	82	87	0	229	22	19	28	29	1.98
114010--114044	4	8.8	4	100	0	70	74	0	0	25	0.82
114042--114073	2	16.0	2	100	0	64	50	0	0	50	1.00
119254--119622	126	2.9	128	97	1	715	22	25	20	31	1.98
120019--120112	27	3.0	34	73	20	112	40	3	4	52	1.37
120019--120112	28	3.2	28	83	11	100	40	3	4	52	1.37
120631--120724	21	4.5	21	88	5	136	20	25	34	20	1.96
120631--120748	42	2.8	41	78	10	130	22	22	33	21	1.97
120728--120775	21	2.3	21	85	0	60	22	12	39	25	1.89
122491--122534	19	2.4	19	81	7	56	54	2	0	43	1.12
122478--122564	17	5.1	18	72	19	62	58	2	0	39	1.11
122506--122580	35	2.2	33	83	11	89	62	4	0	33	1.14
123013--123086	3	25.0	3	97	2	141	32	0	0	67	0.91
124803--124842	2	20.0	2	100	0	80	50	0	0	50	1.00
127740--127769	16	1.9	16	93	6	53	43	10	20	26	1.83
128351--128381	4	7.8	4	100	0	62	51	0	0	48	1.00
129466--129557	3	30.7	3	100	0	184	32	0	0	67	0.91
129812--129949	40	3.4	40	87	3	179	25	22	23	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129841--129960	42	2.9	41	81	8	154	29	20	24	26	1.99
129980--130229	117	2.2	117	86	5	348	24	21	16	37	1.93
130011--130564	117	4.7	117	71	8	341	27	20	14	37	1.92
131288--131759	55	8.7	54	79	10	423	39	19	9	31	1.84
131290--131759	108	4.3	109	79	10	496	39	19	9	31	1.84
133087--133152	26	2.5	26	100	0	132	25	7	24	42	1.81
138066--138107	13	3.2	13	86	6	57	64	2	0	33	1.07
138072--138107	14	2.6	14	91	4	56	69	0	0	30	0.89
142632--142667	17	2.2	16	90	5	54	30	13	2	52	1.55
142784--143079	120	2.6	116	83	8	365	41	22	12	23	1.88
147730--147822	24	3.9	24	71	5	71	24	16	13	45	1.84
152304--152412	24	4.5	24	70	0	83	21	12	16	49	1.78
154495--154541	23	2.0	23	84	8	60	31	48	10	8	1.68
160335--160418	42	2.0	42	95	4	154	33	16	11	38	1.86
162135--162266	66	2.0	66	100	0	264	37	18	19	24	1.93
162142--162248	31	3.3	31	63	23	76	37	15	22	24	1.93
167602--167911	153	2.0	155	96	1	579	41	11	16	30	1.83
171294--171324	16	1.9	16	93	0	53	48	19	12	19	1.81
172141--172225	29	3.0	27	71	19	75	58	0	1	40	1.05
172174--172215	19	2.2	19	87	8	59	61	0	0	38	0.96
174231--174262	2	16.0	2	100	0	64	50	0	0	50	1.00
175051--175176	66	1.9	66	83	3	164	27	13	11	47	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
175947--175991	22	2.0	23	86	4	65	40	6	22	31	1.80
176937--176994	23	2.5	23	83	5	82	53	5	27	13	1.61
180306--180375	32	2.2	32	84	0	86	37	12	18	31	1.89
183510--183546	19	1.9	19	88	0	56	16	21	13	48	1.80
185541--185583	20	2.0	23	86	13	65	48	4	18	27	1.68
185792--185826	7	5.0	7	85	0	52	65	0	0	34	0.93
186904--187100	85	2.3	85	83	8	226	31	2	12	53	1.50
187793--187817	12	2.1	12	100	0	50	32	0	0	68	0.90
187906--187942	15	2.4	16	82	13	51	27	0	0	72	0.84
187917--187941	5	5.0	5	100	0	50	20	0	0	80	0.72
197966--198004	20	2.0	19	95	5	69	30	15	25	28	1.96
200281--200321	22	1.9	22	85	5	57	41	4	12	41	1.64
206700--206737	17	2.1	19	90	9	62	50	7	0	42	1.31
208075--208159	39	2.2	39	86	0	116	18	28	21	31	1.97
208538--208562	2	12.5	2	100	0	50	52	0	0	48	1.00
214962--215004	20	2.2	20	83	8	52	30	13	25	30	1.94
221231--221274	22	2.2	19	84	15	54	27	11	34	27	1.91
222399--222569	90	1.9	87	91	3	279	38	10	7	43	1.66

Tables:   1

The End!