genome.fa.s9287.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009287.1 Hibiscus syriacus cultivar Beakdansim tig00112980_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  362425

Tables:   1   2   

This is table  2  of  2  ( 227 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
200082--200134	14	3.9	13	76	9	52	33	0	18	47	1.49
200291--200384	20	4.7	20	91	0	152	18	22	23	36	1.95
203710--203755	20	2.3	20	88	7	67	21	17	21	39	1.93
203752--203797	21	2.2	21	88	0	65	36	17	28	17	1.92
207516--207563	25	1.9	25	91	0	78	41	18	6	33	1.76
208639--208663	2	12.5	2	100	0	50	48	0	0	52	1.00
213672--213700	13	2.2	13	100	0	58	55	0	6	37	1.27
214880--214953	23	3.2	23	63	24	55	36	13	12	37	1.82
221548--221597	21	2.4	21	93	0	91	24	42	18	16	1.89
221781--221907	5	25.4	5	95	0	218	20	16	0	62	1.32
223969--223997	3	9.7	3	100	0	58	31	34	0	34	1.58
225962--226134	86	2.0	86	100	0	346	28	22	12	35	1.91
233013--233081	30	2.2	30	85	15	95	34	5	17	42	1.73
233022--233081	30	2.0	30	93	6	104	33	6	16	43	1.74
233161--233214	21	2.6	21	96	0	99	20	33	20	25	1.97
233281--233376	20	4.7	21	90	5	160	19	34	17	28	1.95
233281--233376	41	2.3	41	96	0	174	19	34	17	28	1.95
234121--234185	24	2.9	23	84	8	82	24	24	18	32	1.97
237001--237096	23	4.3	23	85	2	115	20	25	22	31	1.98
237232--237285	28	1.9	28	81	7	65	37	1	18	42	1.61
240641--240692	19	2.7	19	100	0	104	21	30	17	30	1.96
241268--241386	55	2.2	55	98	0	229	40	17	21	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
246675--246860	86	2.2	86	100	0	372	31	17	18	33	1.94
247425--247529	55	1.9	55	92	0	174	47	14	10	27	1.76
248559--248584	2	13.0	2	100	0	52	50	0	0	50	1.00
255566--255624	2	32.5	2	76	19	58	55	0	0	44	0.99
255529--255624	44	2.2	44	92	1	158	57	1	0	41	1.06
255538--255625	9	9.7	9	75	8	63	59	1	0	39	1.05
257018--257083	29	2.3	29	100	0	132	42	15	22	19	1.88
259529--259607	26	3.0	26	94	0	140	50	13	3	31	1.60
261794--261822	14	2.1	14	100	0	58	37	0	6	55	1.27
262002--262045	21	2.0	23	86	8	65	47	0	4	47	1.22
262526--262551	4	6.5	4	100	0	52	76	0	0	23	0.78
267397--267433	15	2.3	17	81	13	51	64	5	2	27	1.28
271826--271850	6	4.2	6	100	0	50	52	0	0	48	1.00
274429--274467	9	4.1	9	81	12	51	51	0	2	46	1.14
274448--274519	31	2.4	30	84	13	94	48	2	2	45	1.31
274487--274511	13	1.9	13	100	0	50	48	4	0	48	1.20
274789--274832	19	2.2	20	84	4	54	56	0	0	43	0.99
275134--275187	21	2.7	20	82	2	63	48	0	3	48	1.19
278977--279014	16	2.3	17	81	9	51	65	5	2	26	1.27
281137--281187	26	2.0	26	96	0	93	50	15	5	27	1.67
281183--281260	33	2.4	32	83	12	88	42	2	3	51	1.34
281743--281830	36	2.5	36	76	14	94	45	0	1	53	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
282083--282123	19	2.2	19	86	8	57	58	0	4	36	1.20
301101--301143	16	2.7	16	92	0	68	13	30	27	27	1.95
305696--305742	21	2.2	21	92	0	76	40	10	19	29	1.85
308469--308528	31	1.9	31	86	6	86	23	13	16	46	1.82
308829--308886	29	2.0	29	93	6	100	17	29	12	41	1.85
310285--310344	23	2.8	22	85	9	72	40	20	5	35	1.74
310735--310817	38	2.2	39	93	2	141	16	14	19	49	1.80
311122--311175	20	2.7	20	77	11	56	35	22	20	22	1.96
311163--311411	20	12.4	20	84	5	245	37	25	17	18	1.93
311505--311547	22	2.0	22	86	8	63	27	41	6	23	1.80
312083--312129	24	2.0	24	87	8	69	25	14	21	38	1.92
313346--313651	152	2.0	154	98	1	589	32	13	23	31	1.92
314747--314902	19	8.7	19	79	16	190	44	17	23	14	1.86
314726--314896	52	3.3	53	97	2	328	46	16	23	13	1.83
314892--314996	19	6.1	18	77	19	109	13	24	17	44	1.84
314874--314986	52	2.2	51	85	4	156	18	23	19	38	1.93
315046--315101	14	3.7	14	78	17	67	10	25	21	42	1.85
315035--315108	32	2.3	32	97	0	139	12	24	17	45	1.82
315086--315158	20	3.7	19	82	12	94	12	26	17	43	1.84
315237--315307	33	2.2	33	94	0	124	47	16	23	11	1.79
315676--315867	20	9.6	20	86	4	244	19	19	26	34	1.96
316617--316663	24	2.0	24	91	4	78	40	23	8	27	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
317558--318227	179	3.7	179	93	4	1124	33	16	15	35	1.90
319401--319427	14	1.9	14	100	0	54	51	22	7	18	1.70
319634--319684	3	17.0	3	83	0	66	25	33	3	37	1.74
319641--319688	12	4.0	12	94	0	78	25	33	6	35	1.81
319634--319699	18	3.7	18	85	0	69	22	33	6	37	1.79
319644--319696	12	4.4	12	92	0	70	22	33	7	35	1.83
321121--322633	198	7.7	198	96	2	2747	31	16	14	36	1.90
321121--322633	587	2.6	587	95	2	2758	31	16	14	36	1.90
322672--322720	19	2.6	19	93	0	80	57	10	2	30	1.43
324510--324575	33	2.0	33	87	0	96	24	48	0	27	1.51
326889--326934	20	2.3	19	82	10	65	19	17	10	52	1.74
327163--327610	229	2.0	227	94	1	781	39	7	7	45	1.61
330070--330147	31	2.5	31	95	0	138	33	14	29	23	1.93
332745--332798	27	2.0	27	100	0	108	51	7	7	33	1.58
333034--333071	20	1.9	20	100	0	76	55	2	10	31	1.48
338244--338400	20	7.8	20	82	4	137	43	20	18	17	1.88
338229--338340	40	2.8	39	84	12	147	41	24	16	16	1.89
338912--338958	20	2.3	20	88	0	67	48	19	17	14	1.81
338921--338973	20	2.5	21	87	9	72	50	13	20	15	1.76
340523--340577	21	2.6	21	97	0	101	34	41	12	10	1.78
341148--341266	21	5.7	21	81	3	132	22	35	18	23	1.96
341148--341266	42	2.8	42	91	2	177	22	35	18	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
342616--342655	13	3.0	13	78	7	53	27	0	15	57	1.38
342762--342810	20	2.5	20	96	0	89	48	22	18	10	1.77
343030--343098	20	3.5	20	83	0	84	50	20	17	11	1.76
343115--343191	20	3.8	20	79	6	93	15	15	25	42	1.86
345804--345855	24	2.2	24	82	0	59	36	21	19	23	1.95
346738--346789	18	2.7	20	75	22	65	34	7	23	34	1.83
346762--346839	40	2.0	40	84	5	104	37	8	20	33	1.84
346881--347013	20	6.6	20	78	10	112	21	17	18	42	1.89
346877--347013	60	2.3	61	83	8	165	20	17	18	43	1.89
346876--347013	40	3.4	41	75	8	158	21	17	18	42	1.89
353628--353657	10	2.8	11	90	10	53	83	0	6	10	0.81
353983--354216	81	3.0	81	85	7	279	45	10	3	40	1.57
357438--357486	25	2.0	25	95	0	89	53	14	4	28	1.59
357561--357623	30	2.2	28	85	5	81	50	0	1	47	1.10
359659--359686	14	2.0	14	100	0	56	35	0	7	57	1.26
362243--362277	16	2.1	17	89	5	54	40	2	2	54	1.30
362312--362378	9	7.3	9	72	9	55	55	0	1	43	1.09
362317--362351	17	2.1	16	89	5	52	62	0	0	37	0.95
362390--362414	13	1.9	13	100	0	50	48	4	0	48	1.20

Tables:   1   2

The End!