genome.fa.s9291.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009291.1 Hibiscus syriacus cultivar Beakdansim tig00112993_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  337070

Tables:   1   2   

This is table  2  of  2  ( 155 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
269850--269920	35	2.0	35	86	5	99	19	25	19	35	1.96
274957--275001	21	2.1	21	87	0	63	20	22	20	37	1.94
276949--277004	27	2.1	27	100	0	112	50	0	28	21	1.49
277375--277517	64	2.2	64	86	3	200	38	15	17	28	1.90
278099--278149	22	2.3	22	86	3	66	27	25	17	29	1.98
292800--292863	24	2.8	24	83	6	89	14	23	15	46	1.82
293624--293694	34	2.1	33	82	7	81	26	25	14	33	1.94
294157--294202	10	4.5	10	78	21	51	41	0	0	58	0.98
294157--294206	19	2.5	20	84	15	59	42	0	0	58	0.98
294225--294320	30	3.2	31	81	11	94	45	1	2	51	1.20
294519--294568	20	2.5	20	96	0	91	34	14	10	42	1.78
294551--294638	15	5.9	15	82	2	97	32	20	6	39	1.79
294519--294577	20	3.0	20	89	0	64	33	15	8	42	1.77
294567--294632	15	4.4	15	90	0	105	37	21	6	34	1.78
294551--294632	30	2.8	30	90	1	121	35	19	7	37	1.80
295689--295752	29	2.2	30	78	13	71	42	4	3	50	1.39
296590--296733	61	2.3	61	84	4	180	28	27	15	28	1.97
297223--297266	13	3.5	13	84	12	65	20	50	15	13	1.78
297283--297377	2	50.0	2	71	10	56	52	0	0	47	1.00
300267--300313	18	2.6	19	78	15	55	53	0	2	44	1.12
301536--301599	31	2.1	31	90	0	101	43	6	21	28	1.77
301800--301830	2	15.5	2	100	0	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
307498--307556	31	1.9	31	96	0	109	40	11	15	32	1.83
307501--307581	31	2.6	31	88	0	108	40	12	13	33	1.82
312612--312775	64	2.5	65	81	11	169	32	20	22	25	1.98
313308--313431	22	5.6	22	93	0	203	16	26	29	28	1.97
319898--319922	13	1.9	13	100	0	50	80	0	4	16	0.87
322145--322514	55	6.7	55	87	4	507	28	24	15	31	1.96
322145--322514	111	3.4	111	90	2	534	28	24	15	31	1.96
323512--323568	8	7.9	8	75	25	56	14	10	0	75	1.05
323512--323568	21	2.7	22	86	8	82	14	10	0	75	1.05
323535--323568	7	4.7	7	88	3	50	14	5	0	79	0.91
323512--323568	14	4.0	15	75	13	66	14	10	0	75	1.05
323512--323594	42	2.0	40	81	11	96	12	13	0	74	1.07
335193--335217	13	1.9	13	100	0	50	80	0	4	16	0.87

Tables:   1   2

The End!