genome.fa.s9316.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009316.1 Hibiscus syriacus cultivar Beakdansim tig00113072_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  190145

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--16126	7	2338.4	7	96	3	28961	42	43	0	13	1.50
16128--16173	7	6.6	7	100	0	92	15	56	28	0	1.39
21617--21657	21	2.0	21	90	0	64	43	26	14	14	1.84
37775--37814	21	1.9	21	89	0	62	35	27	7	30	1.84
37847--39331	10	150.5	10	75	11	904	41	27	5	25	1.76
41426--41519	37	2.5	37	96	0	170	31	11	0	56	1.35
43653--43774	64	1.9	64	83	3	156	38	16	16	28	1.90
44973--45070	31	3.2	31	82	2	108	24	18	22	34	1.96
49638--49745	31	3.5	31	78	3	94	24	17	22	36	1.95
49691--49757	30	2.2	31	83	2	82	19	19	26	34	1.96
56993--57153	80	2.0	80	100	0	322	31	26	9	33	1.88
66387--66427	18	2.3	19	79	8	50	31	4	34	29	1.79
68272--68298	5	5.4	5	100	0	54	0	18	0	81	0.69
77564--77819	128	2.0	129	90	2	408	28	16	4	51	1.63
77690--78008	159	2.0	157	84	3	406	26	18	5	48	1.70
78290--78323	2	17.0	2	100	0	68	50	0	0	50	1.00
81279--81320	2	21.0	2	100	0	84	50	0	0	50	1.00
81371--81443	37	2.0	37	87	10	107	52	20	8	19	1.71
93914--93965	21	2.5	21	100	0	104	38	21	23	17	1.93
99506--99544	3	13.0	3	88	0	60	66	5	0	28	1.12
103821--103867	23	2.0	24	91	4	78	31	25	23	19	1.98
104530--104581	20	2.6	20	100	0	104	34	19	15	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108043--108103	23	2.7	23	86	0	86	34	26	19	19	1.96
109265--109353	30	3.0	30	91	1	135	31	26	21	20	1.98
109349--109449	31	3.2	31	79	8	123	33	17	18	29	1.95
111685--111778	20	4.7	20	89	5	154	28	20	21	29	1.98
111766--111826	24	2.5	24	86	7	88	21	21	21	36	1.96
120933--120973	21	1.9	21	90	5	64	60	0	2	36	1.10
152418--152456	21	1.9	21	89	5	62	30	5	10	53	1.56
153046--153280	20	11.6	20	74	9	120	38	23	17	19	1.93
153107--153277	40	4.2	41	81	5	168	38	23	17	20	1.93
153479--153536	27	2.1	27	81	6	64	41	29	8	20	1.82
153822--153898	20	3.8	21	86	5	90	50	18	19	11	1.77
153901--153993	20	5.0	20	75	17	85	11	24	20	43	1.85
154762--154954	20	9.6	20	84	5	221	21	18	21	38	1.93
154762--154971	40	5.2	40	88	3	271	20	17	22	39	1.93
154741--154892	60	2.5	59	86	6	173	23	19	21	36	1.95
154762--154990	60	3.8	60	81	5	192	20	17	22	38	1.93
154762--154978	20	10.8	19	79	8	164	21	17	22	38	1.93
155238--155262	2	12.5	2	100	0	50	52	0	0	48	1.00
155481--155600	62	2.0	61	83	1	150	20	27	29	22	1.99
155893--156005	60	1.9	60	88	3	174	29	26	19	24	1.98
169834--169963	9	15.2	8	68	20	59	76	1	14	7	1.08
169872--169934	22	2.9	21	75	17	65	76	0	17	6	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
169872--169972	44	2.3	45	81	11	111	77	0	15	6	0.98
171287--171809	102	5.0	102	87	5	679	29	15	26	28	1.96
171287--171809	153	3.3	153	88	5	697	29	15	26	28	1.96
171287--171739	51	8.7	51	90	3	674	28	15	27	28	1.96
171302--171857	51	10.5	55	85	7	377	29	15	26	28	1.96
175203--175246	21	2.1	21	87	8	63	25	22	18	34	1.96
185916--186035	30	4.0	31	89	7	176	36	24	19	20	1.95
185944--186036	29	3.1	29	95	4	159	36	24	19	19	1.95
186703--186747	21	2.1	21	87	0	63	15	24	28	31	1.96

Tables:   1

The End!