genome.fa.s9317.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009317.1 Hibiscus syriacus cultivar Beakdansim tig00113073_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  334282

Tables:   1   2   

This is table  2  of  2  ( 177 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
194009--194300	122	2.4	121	80	8	303	23	28	14	32	1.95
198598--198649	17	3.2	17	75	10	54	32	3	13	50	1.60
202330--202403	33	2.3	33	84	9	91	27	6	47	18	1.74
202613--202696	24	3.5	24	73	12	82	20	3	47	28	1.66
202563--202691	27	5.2	27	65	21	84	20	3	46	28	1.68
202563--202694	48	2.8	48	83	2	167	21	3	46	28	1.68
202699--202846	36	4.3	36	70	14	114	23	6	43	26	1.77
202659--202807	65	2.3	66	90	1	228	19	4	47	28	1.69
202693--203032	72	4.7	71	69	14	198	23	6	40	29	1.79
202908--203040	36	3.7	36	82	0	167	24	5	42	27	1.76
202908--203065	36	4.4	34	78	9	136	23	6	43	27	1.78
202908--203068	72	2.2	72	85	2	216	23	6	42	27	1.78
206768--206805	15	2.6	15	83	4	51	21	13	26	39	1.89
206957--207010	26	2.0	27	82	7	65	14	11	25	48	1.77
206965--207045	26	3.4	25	68	19	73	17	13	25	43	1.86
208600--208647	21	2.2	23	88	7	73	29	14	8	47	1.73
210184--210404	110	2.0	110	86	0	307	30	21	11	37	1.88
211232--211290	31	2.0	30	84	12	79	44	30	13	11	1.80
212307--212367	31	2.0	31	96	0	113	29	9	8	52	1.63
214455--214555	30	3.4	30	83	2	87	46	8	7	36	1.64
214467--214554	31	2.9	29	81	8	104	46	6	7	38	1.60
214702--214765	21	3.0	21	90	0	101	18	10	34	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
217047--217119	36	2.0	37	86	5	105	47	4	1	46	1.30
222204--222346	77	1.9	77	86	2	207	41	7	21	29	1.81
225517--225608	33	2.8	33	80	4	80	40	29	14	16	1.87
225529--225608	32	2.5	33	91	2	126	40	27	16	16	1.89
230658--230785	31	4.1	31	76	11	118	35	19	17	28	1.94
233510--233550	22	2.0	21	85	9	57	26	24	24	24	2.00
243740--243776	14	2.6	15	83	8	51	62	0	0	37	0.96
244642--244668	7	3.9	7	100	0	54	25	0	0	74	0.83
245083--245110	14	2.0	14	100	0	56	64	0	0	35	0.94
267469--267576	51	2.1	51	96	0	198	41	23	15	19	1.89
267742--267818	38	2.0	38	94	0	136	49	12	16	20	1.79
272268--272335	14	4.7	15	75	14	70	58	13	1	26	1.43
273757--273798	20	2.0	21	86	4	59	23	30	21	23	1.99
275957--276104	75	2.0	75	93	0	251	37	19	4	38	1.73
278557--278877	103	3.1	103	95	0	570	26	11	23	38	1.89
278893--278956	23	2.8	23	92	0	101	18	23	26	31	1.98
285726--285750	12	2.1	12	100	0	50	32	8	36	24	1.84
290827--290888	25	2.4	26	84	7	74	46	0	3	50	1.17
290856--290936	42	1.9	42	87	0	117	46	0	2	50	1.14
291009--291091	21	4.0	21	71	25	70	48	1	2	48	1.22
291008--291083	38	1.9	41	89	10	122	50	1	2	46	1.24
294684--294782	50	2.0	50	93	0	171	28	17	12	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
296925--296949	2	12.5	2	100	0	50	52	0	0	48	1.00
299769--299814	24	1.9	24	86	0	65	54	0	2	43	1.12
299820--299855	18	1.9	19	88	5	56	55	16	8	19	1.66
301931--302007	36	2.1	36	85	7	102	48	1	3	46	1.28
301983--302030	18	2.7	18	80	9	62	54	4	0	41	1.20
308770--308885	44	2.6	44	84	0	142	31	18	12	37	1.88
319152--319202	27	1.9	26	84	11	68	29	15	25	29	1.96
319431--319477	23	2.0	24	87	8	69	21	4	4	70	1.22
320159--320227	33	2.1	33	100	0	138	39	11	11	37	1.78
324824--324862	17	2.3	17	86	0	51	35	17	10	35	1.84
328194--328838	145	4.4	141	80	9	584	45	17	13	22	1.84
329781--329806	13	2.0	13	100	0	52	61	7	7	23	1.49
331568--331612	22	2.0	24	83	16	60	51	2	6	40	1.41

Tables:   1   2

The End!