genome.fa.s9323.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009323.1 Hibiscus syriacus cultivar Beakdansim tig00113084_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  233993

Tables:   1   2   

This is table  2  of  2  ( 191 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
143414--143797	189	2.0	189	84	3	504	37	11	20	30	1.88
144022--144207	98	1.9	98	93	2	320	22	18	24	34	1.96
145816--145951	69	2.0	69	84	5	179	27	13	22	37	1.91
146009--146074	27	2.5	26	82	9	80	4	18	1	75	1.04
146032--146077	17	2.8	16	80	6	56	2	15	2	80	0.91
146031--146082	25	2.2	24	86	6	70	1	13	3	80	0.93
149109--149181	31	2.3	31	79	9	76	71	1	9	17	1.20
149198--149313	9	12.9	9	73	17	66	75	0	4	19	1.03
149258--149412	38	3.8	41	73	13	133	65	1	1	30	1.14
149256--149403	46	3.3	44	78	11	160	66	2	2	29	1.14
149265--149406	42	3.5	39	77	14	137	66	2	2	29	1.15
150196--150268	2	37.0	2	97	2	139	50	0	0	49	1.00
150435--150460	2	13.0	2	100	0	52	50	0	0	50	1.00
155709--155767	29	2.2	26	82	11	66	15	16	16	50	1.78
156919--156951	12	2.8	12	90	0	57	24	24	15	36	1.93
158193--158261	9	7.7	9	80	0	75	47	13	8	30	1.72
158200--158268	18	3.8	18	81	7	86	46	13	10	30	1.75
159449--159539	30	3.1	29	80	4	92	35	15	6	42	1.73
161268--161467	104	1.9	104	80	4	233	40	7	23	29	1.82
161270--161489	51	4.3	51	78	6	201	41	6	23	28	1.79
163727--163769	21	2.0	21	90	0	68	32	25	25	16	1.96
163840--163879	14	2.9	14	88	3	64	77	0	22	0	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
170540--170582	21	2.0	21	86	0	59	30	27	25	16	1.97
170609--170646	20	1.9	20	88	0	58	23	34	31	10	1.89
170650--170699	17	2.9	17	80	11	66	78	0	22	0	0.76
170656--170696	14	2.9	14	85	7	57	75	0	24	0	0.80
174367--174434	27	2.5	27	85	0	100	27	33	20	17	1.95
175223--175270	21	2.3	21	100	0	96	31	10	25	33	1.89
177388--177427	22	1.9	20	85	10	53	22	7	2	67	1.28
177676--177719	20	2.1	21	84	12	56	50	0	0	50	1.00
184483--184550	27	2.5	27	85	0	91	29	32	20	17	1.96
185340--185387	21	2.3	21	100	0	96	31	10	25	33	1.89
187501--187540	22	1.9	20	85	10	53	22	7	2	67	1.28
188401--188454	19	2.8	19	76	20	58	59	3	3	33	1.33
199545--199569	7	3.6	7	100	0	50	60	28	12	0	1.32
200192--200279	23	3.8	23	76	0	68	43	20	13	22	1.87
200242--200303	23	2.7	23	80	7	81	41	17	12	27	1.86
201332--201393	29	2.1	29	96	0	115	16	32	33	17	1.92
201453--201525	20	3.3	20	67	26	58	17	8	47	26	1.75
201453--201545	46	2.0	46	95	0	168	18	9	46	25	1.79
202091--202134	21	2.1	21	91	0	70	29	0	15	54	1.42
202111--202164	28	1.9	28	96	0	99	29	0	12	57	1.36
202680--202724	21	2.2	21	84	4	56	35	0	8	55	1.31
202984--203042	26	2.3	25	75	18	66	47	8	3	40	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
205928--206268	26	13.6	26	75	11	255	43	2	9	44	1.50
205870--206268	124	3.2	124	94	2	678	43	2	9	44	1.50
205965--206281	38	8.5	37	70	15	156	43	2	8	45	1.48
206176--206294	38	3.1	38	81	4	105	46	3	5	45	1.41
206971--207103	29	4.6	29	92	1	205	22	31	30	15	1.95
207153--207191	20	2.0	20	94	0	69	12	17	30	38	1.88
207179--207225	21	2.2	21	100	0	94	14	29	25	29	1.95
207153--207192	9	4.2	9	81	12	53	12	17	32	37	1.87
209927--210084	42	3.8	41	76	7	120	34	17	20	27	1.95
211499--211527	11	2.6	11	100	0	58	48	27	0	24	1.51
213014--213067	28	1.9	28	85	7	74	29	9	14	46	1.76
219207--219254	22	2.3	20	80	16	53	27	12	6	54	1.61
219574--219658	21	4.1	21	81	6	93	37	20	41	1	1.60
219610--219670	20	3.0	20	85	4	77	40	19	39	0	1.52
220007--220231	43	5.2	42	72	11	143	31	20	19	28	1.97
220007--220275	43	6.2	42	72	11	136	29	20	20	29	1.97
220297--220340	12	3.2	14	78	15	56	9	15	27	47	1.76
222140--222479	26	13.7	26	75	15	224	43	2	9	44	1.51
222085--222479	122	3.2	124	92	4	642	43	2	9	44	1.50
222137--222479	148	2.3	145	79	11	333	43	2	9	44	1.51
222399--222491	37	2.5	36	82	5	114	44	3	4	48	1.38
222748--222785	16	2.3	17	86	4	51	57	2	0	39	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
223183--223316	29	4.6	29	94	1	216	21	31	31	15	1.95
223366--223404	20	2.0	20	94	0	69	12	17	30	38	1.88
223392--223438	21	2.2	21	96	0	85	14	29	23	31	1.95
223366--223405	9	4.2	9	81	12	53	12	17	32	37	1.87
228323--228370	21	2.3	21	100	0	96	31	10	25	33	1.89

Tables:   1   2

The End!