genome.fa.s9325.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009325.1 Hibiscus syriacus cultivar Beakdansim tig00113089_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56070

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1408--1434	14	1.9	14	100	0	54	88	11	0	0	0.50
2211--2876	104	6.4	105	95	1	1153	33	26	18	21	1.96
4554--4583	3	10.0	3	92	0	51	30	0	3	66	1.07
4633--4698	9	7.2	9	74	3	51	22	7	0	69	1.13
5013--5055	21	2.0	22	82	13	54	16	18	0	65	1.28
7855--7879	3	8.3	3	100	0	50	68	0	32	0	0.90
12130--12175	23	2.0	23	86	0	65	13	15	8	63	1.52
16354--16403	20	2.4	22	80	16	61	66	0	12	22	1.24
19453--19515	33	1.9	33	83	0	81	26	20	15	36	1.93
19532--19603	32	2.2	32	87	0	99	22	23	27	26	1.99
19648--19691	23	2.0	21	83	16	54	40	15	4	38	1.68
23275--23367	21	4.6	20	78	4	96	38	18	24	18	1.92
23272--23367	41	2.3	41	98	0	183	39	17	23	18	1.92
23275--23367	20	4.6	20	78	4	96	38	18	24	18	1.92
23356--23449	20	4.7	20	77	2	80	35	24	17	23	1.95
23353--23430	41	1.9	41	83	0	102	41	21	15	21	1.90
23981--24025	19	2.4	19	92	0	72	48	26	15	8	1.74
24035--24122	33	2.6	33	92	1	140	11	25	25	38	1.89
24090--24147	20	2.9	20	80	10	64	13	24	18	43	1.87
25407--25479	21	3.7	20	72	15	62	31	41	12	15	1.84
26144--26266	42	2.9	42	80	2	122	22	36	17	22	1.95
26200--26266	21	3.2	21	66	6	55	23	35	20	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27620--27655	14	2.6	14	95	0	63	30	0	25	44	1.54
27834--27950	19	6.7	19	73	18	119	12	23	18	45	1.84
27859--27950	33	2.8	33	96	0	166	13	22	18	45	1.84
27834--27950	52	2.3	51	79	7	137	12	23	18	45	1.84
28018--28060	19	2.2	19	87	4	59	20	20	23	34	1.96
28146--28182	14	2.6	14	86	0	56	48	21	0	29	1.50
30038--30104	19	3.5	19	83	4	89	37	23	23	14	1.93
30093--30150	14	3.9	14	79	16	71	48	25	17	8	1.75
30077--30155	32	2.4	33	95	2	142	46	24	18	10	1.80
30184--30240	14	3.9	14	77	20	62	10	17	24	47	1.79
30175--30224	17	3.1	17	73	26	63	10	20	24	46	1.81
30170--30256	31	2.7	33	89	7	142	12	19	21	45	1.83
30241--30283	19	2.3	19	83	0	59	18	25	20	34	1.96
30767--30811	18	2.5	18	85	0	63	15	15	42	26	1.87
32130--32167	20	1.9	20	88	0	58	50	21	15	13	1.78
32431--32474	22	2.0	22	95	0	79	18	15	45	20	1.85
32662--32755	20	4.7	20	80	2	89	23	18	24	34	1.96
32642--32756	20	5.7	20	78	5	88	23	17	23	35	1.95
32684--32818	41	3.3	41	81	4	130	20	21	20	37	1.94
32745--32837	20	4.6	20	78	4	96	18	24	18	38	1.92
32745--32840	41	2.3	41	98	0	183	18	23	17	39	1.92
33924--33967	18	2.4	18	84	3	52	56	6	0	36	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35414--35457	3	14.0	3	86	9	61	63	0	0	36	0.95
35414--35492	29	2.8	28	75	9	81	60	1	0	37	1.05
35415--35492	9	8.3	10	75	14	69	60	1	0	38	1.05
35908--35953	18	2.5	19	72	6	51	32	2	10	54	1.47
44041--44079	17	2.3	17	86	8	53	43	2	7	46	1.46
44486--44591	52	2.0	52	90	0	167	37	18	16	27	1.92

Tables:   1

The End!