genome.fa.s9329.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009329.1 Hibiscus syriacus cultivar Beakdansim tig00113094_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  163802

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6096--6125	7	4.4	7	91	8	53	23	30	30	16	1.96
6100--6125	13	2.0	13	100	0	52	23	30	30	15	1.95
6102--6142	12	3.3	12	89	3	55	19	26	36	17	1.94
6144--6214	19	3.7	20	81	5	83	25	28	26	19	1.99
6144--6213	9	7.3	9	70	12	50	25	28	27	18	1.98
8115--8143	13	2.3	13	94	5	51	10	17	58	13	1.62
14518--14556	9	4.2	9	80	6	51	15	23	30	30	1.95
14566--14614	17	2.8	17	93	6	80	16	48	22	12	1.79
24381--24420	21	1.9	21	94	0	71	25	27	12	35	1.92
25870--25900	15	2.1	15	100	0	62	41	12	25	19	1.87
36700--36769	36	1.9	36	88	0	104	18	35	12	32	1.89
45891--45937	21	2.2	21	100	0	94	25	19	12	42	1.86
50541--50588	21	2.3	21	100	0	96	25	18	14	41	1.88
53732--53773	20	2.1	20	86	0	57	28	4	7	59	1.44
53889--53941	26	2.1	24	86	6	70	15	7	3	73	1.20
53894--53943	13	3.9	13	75	15	50	20	6	4	70	1.25
57839--57913	31	2.4	31	100	0	150	37	9	9	44	1.69
61218--61269	20	2.6	20	93	0	95	34	30	9	25	1.88
61287--61353	21	3.2	22	75	12	79	29	26	14	28	1.96
61218--61353	20	6.7	21	72	10	77	30	27	12	30	1.93
61337--61495	40	4.3	36	80	6	128	25	25	16	31	1.97
61358--61495	20	7.2	20	80	9	153	24	25	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61358--61495	60	2.4	54	86	7	177	24	25	18	31	1.97
61537--61645	20	5.8	20	74	12	104	26	15	30	27	1.96
61508--61666	54	2.9	54	87	0	228	25	15	30	28	1.95
61557--61625	34	2.0	34	94	0	120	27	13	30	28	1.94
61694--61744	20	2.5	20	81	6	59	21	9	31	37	1.86
64726--65220	230	2.2	227	96	1	900	44	8	7	39	1.63
65499--65545	20	2.4	19	89	10	76	55	10	17	17	1.69
65287--65759	181	2.6	182	89	1	680	42	14	16	26	1.86
65680--65726	20	2.4	19	79	10	58	51	10	19	19	1.75
67945--67985	21	2.0	21	95	0	73	43	12	26	17	1.84
68022--68087	33	2.0	33	90	0	105	28	0	48	22	1.51
69880--69924	19	2.4	19	96	0	81	33	2	8	55	1.43
70051--72840	200	13.9	200	96	1	5156	34	15	18	31	1.92
70051--72840	399	6.9	400	96	2	5156	34	15	18	31	1.92
70863--70917	21	2.6	21	100	0	110	40	16	16	27	1.89
70051--72840	599	4.6	600	96	2	5156	34	15	18	31	1.92
74306--74357	6	8.7	6	82	0	59	40	7	32	19	1.80
74306--74357	12	4.3	12	87	0	77	40	7	32	19	1.80
74329--74387	9	6.6	9	76	5	57	32	6	33	27	1.83
74335--74390	15	3.7	15	85	0	76	32	5	33	28	1.80
74306--74360	18	3.1	18	86	0	74	40	7	32	20	1.80
74319--74369	24	2.1	24	92	0	84	37	7	33	21	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74323--74391	6	11.5	6	84	0	75	33	5	33	27	1.81
75556--76497	183	5.1	183	98	0	1794	33	14	17	34	1.91
78948--78995	21	2.3	21	96	0	87	29	12	8	50	1.69
79193--79242	23	2.2	23	85	0	64	36	4	20	40	1.71
79481--79530	23	2.2	23	88	0	73	34	4	22	40	1.72
78957--80218	289	4.4	289	97	0	2384	39	8	13	38	1.75
79770--79819	23	2.2	23	88	0	73	34	4	22	40	1.72
80059--80108	23	2.2	23	88	0	73	34	4	22	40	1.72
80584--80631	23	2.1	23	88	0	69	35	18	8	37	1.81
81112--81156	22	2.0	22	83	8	56	33	6	0	60	1.23
81514--81647	60	2.2	59	82	8	155	43	5	18	32	1.74
81794--81862	2	34.5	2	100	0	138	49	0	0	50	1.00
82598--82914	21	15.2	21	89	2	398	21	21	22	34	1.97
84069--84161	21	4.6	20	77	7	91	37	20	20	21	1.94
84065--84155	40	2.3	40	92	0	146	37	20	19	21	1.95
97251--97291	13	3.2	13	79	6	57	17	19	43	19	1.88
97270--97305	18	2.0	18	100	0	72	16	16	50	16	1.79
97308--97362	10	5.6	10	85	10	78	34	29	21	14	1.93
97308--97363	19	2.9	19	87	10	78	33	28	21	16	1.95
104529--104569	13	3.2	13	79	6	57	17	19	43	19	1.88
104548--104583	18	2.0	18	100	0	72	16	16	50	16	1.79
104586--104640	10	5.6	10	85	10	78	34	29	21	14	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104586--104641	19	2.9	19	87	10	78	33	28	21	16	1.95
111670--111794	29	4.3	29	75	4	101	40	23	8	28	1.82
111815--111852	18	2.1	18	95	0	67	15	18	47	18	1.83
111862--111909	10	4.8	10	80	10	62	39	27	18	14	1.90
120319--120348	16	1.9	15	93	6	51	16	16	6	60	1.56
121137--121171	16	2.2	16	94	0	61	17	25	17	40	1.90
121748--121798	26	2.0	26	88	0	75	31	9	3	54	1.51
126633--126741	15	7.3	15	95	0	200	33	27	14	23	1.94
134831--134870	21	1.9	21	94	0	71	25	27	12	35	1.92
139645--139729	3	28.3	3	100	0	170	67	0	0	32	0.91
146661--146741	16	5.1	16	93	0	135	18	27	13	40	1.88
147016--147062	14	3.7	14	71	26	50	44	0	4	51	1.21
147015--147063	23	2.1	24	96	3	91	46	0	4	48	1.20
147221--147297	41	1.9	40	84	7	102	25	0	24	49	1.51
147367--147438	20	3.5	20	81	7	83	38	6	5	48	1.53
148399--148499	47	2.1	47	98	0	193	36	31	11	19	1.88
149777--149818	20	2.1	20	90	0	66	26	4	9	59	1.48
149934--149984	27	2.0	27	88	7	79	19	3	3	72	1.16
154286--154353	30	2.3	30	84	0	91	50	10	2	36	1.52
156374--156408	16	2.2	16	94	0	61	54	0	8	37	1.31
156538--156570	17	1.9	17	100	0	66	24	0	12	63	1.28
156887--156938	21	2.3	23	83	6	63	38	7	0	53	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
160660--160729	30	2.3	30	97	0	131	5	15	22	55	1.61
161924--162331	195	2.1	195	85	1	532	36	13	19	30	1.91
162498--162529	15	2.0	17	88	11	50	31	12	6	50	1.65

Tables:   1

The End!