genome.fa.s9331.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009331.1 Hibiscus syriacus cultivar Beakdansim tig00113098_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  375911

Tables:   1   2   

This is table  2  of  2  ( 214 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
260223--260309	24	3.6	24	79	0	102	22	11	14	50	1.75
261539--261758	71	3.1	71	61	25	163	38	9	13	39	1.77
261600--261642	20	2.2	20	87	8	61	34	0	4	60	1.17
261578--261799	73	3.1	73	61	25	171	37	7	13	40	1.74
261744--261786	20	2.2	20	87	8	61	34	0	4	60	1.17
261526--261815	144	2.0	144	99	0	571	38	8	12	39	1.75
277066--278196	564	2.0	566	89	3	1717	35	12	20	30	1.90
285087--285161	36	2.1	36	92	0	123	24	21	18	36	1.95
287752--287847	39	2.4	40	82	5	115	43	1	17	37	1.56
288476--288542	20	3.3	20	79	4	89	41	17	22	17	1.90
288493--288568	21	3.7	21	76	3	91	42	18	23	15	1.89
288557--288651	20	4.7	20	80	2	91	34	24	17	23	1.96
288476--288568	41	2.3	41	98	0	177	40	18	23	17	1.90
288554--288631	41	1.9	41	86	0	111	39	21	16	21	1.92
289085--289135	19	2.7	19	100	0	102	41	27	21	9	1.84
289162--289199	20	1.9	20	88	0	58	13	15	21	50	1.78
290508--290552	18	2.5	18	88	0	72	26	44	15	13	1.83
290935--290979	17	2.6	17	86	6	56	4	2	22	71	1.15
291033--291088	20	2.8	20	83	2	69	37	23	23	16	1.93
291072--291135	19	3.6	19	68	20	57	45	18	20	15	1.86
291147--291204	14	3.9	14	79	16	62	10	17	24	48	1.78
291142--291220	32	2.4	33	93	2	133	11	18	22	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
291142--291278	20	7.7	19	73	17	98	13	19	24	43	1.86
293125--293160	14	2.6	14	90	0	54	30	0	22	47	1.52
293325--293382	20	2.9	20	94	0	98	17	22	22	37	1.93
294668--294692	12	2.1	12	100	0	50	72	0	28	0	0.86
296981--297107	33	3.8	33	85	4	184	42	18	22	16	1.89
296982--297114	66	2.0	66	97	0	248	41	18	22	18	1.90
297107--297149	19	2.2	20	87	4	61	16	16	23	44	1.86
297290--297340	14	3.6	14	94	0	84	43	25	0	31	1.55
298700--298766	21	3.2	21	68	4	55	19	20	35	23	1.95
298700--298822	42	2.9	41	80	7	113	22	17	36	22	1.95
300849--300947	33	3.0	33	84	1	126	40	26	21	12	1.88
300919--300989	19	3.7	19	90	3	115	46	22	19	11	1.81
300824--300989	20	9.1	19	71	16	118	43	22	21	12	1.85
300985--301065	19	4.5	19	74	16	73	11	17	24	46	1.80
301582--301634	20	2.7	20	93	0	88	26	20	28	24	1.99
301747--301787	21	2.0	21	85	0	55	34	31	17	17	1.93
301997--302051	26	2.1	27	86	10	78	34	1	0	63	1.05
302436--302480	23	1.9	24	81	4	56	48	4	0	46	1.22
304018--304053	17	2.1	17	94	0	63	52	11	30	5	1.59
304017--304078	16	3.8	16	78	4	61	43	14	37	4	1.67
304817--304885	30	2.3	30	92	2	111	46	11	7	34	1.68
306527--306640	40	2.8	40	90	1	174	51	2	7	37	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
307722--307771	2	25.0	2	100	0	100	50	0	0	50	1.00
309941--310029	26	3.4	26	90	1	133	49	6	26	16	1.71
312645--312702	27	2.1	27	81	12	66	56	17	5	20	1.59
314969--315046	23	3.3	23	81	1	93	32	23	20	24	1.98
315053--315373	103	3.1	103	98	0	615	36	23	13	26	1.92
321026--321102	23	3.3	22	76	8	73	35	20	18	25	1.95
321109--321429	103	3.1	103	96	0	588	36	23	13	26	1.92
326440--326497	24	2.5	22	81	13	71	53	13	3	29	1.56
331317--331414	42	2.4	42	81	5	110	28	15	25	30	1.96
331346--331431	42	2.0	42	82	4	102	30	13	20	34	1.92
331451--331508	20	2.8	20	71	21	57	24	17	25	32	1.96
336082--336154	31	2.4	31	83	0	83	30	16	20	32	1.95
336136--336208	31	2.4	31	88	0	101	27	27	13	31	1.94
337252--337295	12	3.7	12	76	11	54	31	22	6	38	1.81
337254--337307	24	2.2	24	90	0	90	29	25	7	37	1.83
346020--346091	19	3.7	19	81	5	81	20	25	23	30	1.99
346102--346141	19	2.2	17	91	8	62	17	40	25	17	1.91
346111--346147	7	5.6	7	81	12	51	16	32	27	24	1.96
348855--349011	21	7.8	20	71	7	75	38	24	17	19	1.93
348979--349172	20	9.6	20	76	8	76	35	25	19	19	1.95
348979--349172	40	4.8	39	82	3	199	35	25	19	19	1.95
348979--349171	60	3.2	60	83	0	251	35	25	19	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
349552--349622	33	2.2	33	92	0	115	11	22	18	47	1.80
349743--349797	14	3.6	14	73	21	56	41	23	25	9	1.83
349743--349813	33	2.2	33	94	0	124	43	25	22	8	1.81
349809--349906	19	5.7	19	70	22	81	10	24	22	42	1.84
349831--349920	14	5.7	14	74	23	81	8	25	23	42	1.83
349814--349928	33	3.5	33	95	0	212	9	24	20	45	1.81
351623--352001	92	4.1	93	98	0	735	22	12	18	46	1.83
351623--352003	185	2.1	185	97	1	737	22	12	18	46	1.82
352045--352173	19	7.3	19	75	17	125	45	28	17	8	1.77
352081--352173	33	2.8	32	91	4	150	46	27	18	7	1.76
352045--352173	52	2.5	52	74	14	140	45	28	17	8	1.77
352169--352303	19	7.6	19	75	16	128	11	19	23	45	1.82
352191--352247	14	3.7	14	77	20	60	10	21	22	45	1.82
352174--352266	33	2.8	33	95	0	168	10	20	21	47	1.80
354196--354231	14	2.6	14	95	0	63	33	0	22	44	1.53
354338--354419	19	4.6	18	78	18	100	42	18	24	14	1.87
354426--354692	52	5.0	52	92	5	446	14	22	16	46	1.84
354448--354720	19	15.4	19	81	15	345	13	21	17	46	1.83
354448--354690	108	2.3	102	86	9	165	13	22	16	46	1.83
357000--357024	12	2.1	12	100	0	50	0	28	0	72	0.86
357199--357245	24	2.0	24	87	8	69	38	21	14	25	1.92
357921--358310	20	19.5	20	86	4	464	20	18	25	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
360076--360105	15	2.0	15	93	0	51	56	30	0	13	1.37
372546--372579	11	3.1	11	95	0	59	26	14	35	23	1.94
375365--375403	13	3.1	13	96	3	71	30	20	33	15	1.94
375528--375566	5	8.2	5	88	5	55	2	20	56	20	1.54
375564--375597	9	3.7	9	84	7	50	23	32	29	14	1.94
375567--375620	19	2.9	19	88	2	83	27	29	25	16	1.97

Tables:   1   2

The End!