genome.fa.s9341.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009341.1 Hibiscus syriacus cultivar Beakdansim tig00113121_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  151722

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
296--362	22	3.0	22	100	0	134	19	26	26	26	1.99
6369--6411	21	2.0	21	86	0	59	30	27	25	16	1.97
6391--6541	67	2.3	67	88	2	214	27	27	27	17	1.98
6842--6915	26	2.6	28	85	10	98	39	10	13	36	1.80
6924--6983	30	2.0	31	90	3	95	36	6	23	33	1.81
7203--7269	22	3.0	22	100	0	134	19	26	26	26	1.99
8190--8320	19	7.7	19	67	23	103	43	19	22	14	1.87
8190--8316	33	3.8	33	89	4	211	43	19	22	14	1.88
8191--8323	66	2.0	66	98	0	257	42	19	21	16	1.89
8345--8391	19	2.5	19	92	0	76	12	19	21	46	1.82
8500--8533	14	2.4	14	90	0	59	44	23	0	32	1.54
9928--10091	42	3.9	42	79	3	186	23	17	37	21	1.93
9923--10094	84	2.0	84	97	0	326	23	17	37	21	1.94
10311--10497	91	2.0	90	90	6	295	47	19	11	21	1.81
10641--10782	63	2.3	63	86	2	169	27	37	16	19	1.92
10664--10794	63	2.1	63	97	0	244	25	37	17	19	1.94
12240--12384	19	8.1	19	75	16	130	44	18	23	13	1.85
12265--12329	33	2.0	33	93	0	112	41	23	24	10	1.86
12248--12384	52	2.6	52	90	1	202	43	19	23	13	1.86
12380--12424	19	2.4	19	84	0	63	6	15	26	51	1.68
12981--13094	20	5.7	20	81	6	113	26	17	24	31	1.97
12981--13115	61	2.2	61	81	2	155	24	19	23	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13189--13222	12	2.8	12	100	0	68	41	26	26	5	1.78
15199--15288	23	3.9	23	82	4	101	13	13	14	58	1.63
15209--15234	13	2.0	13	100	0	52	23	7	7	61	1.49
15271--15302	14	2.3	14	94	0	55	9	15	18	56	1.66
16379--16409	13	2.4	13	100	0	62	22	0	35	41	1.54
16646--16717	35	2.1	35	94	0	126	34	12	13	38	1.83
16869--16898	13	2.3	13	94	0	51	46	20	13	20	1.83
21850--21876	13	2.1	13	100	0	54	22	25	14	37	1.93
25606--25716	44	2.6	43	82	1	114	30	9	5	54	1.56
27991--28049	30	2.0	29	83	6	75	33	15	25	25	1.95
29103--29155	21	2.5	21	84	0	70	20	26	18	33	1.96
29145--29392	41	6.2	40	87	4	202	30	19	18	31	1.96
29102--29391	20	14.3	20	83	6	266	28	20	18	32	1.96
29102--29391	61	4.8	60	79	6	266	28	20	18	32	1.96
32778--32860	20	4.2	20	71	15	64	33	22	20	22	1.97
32844--32979	33	4.1	33	95	0	245	44	18	23	13	1.85
32824--32968	19	8.4	19	67	21	95	44	19	22	13	1.86
32978--33054	19	4.3	19	75	18	76	10	20	22	46	1.80
33164--33200	14	2.6	14	91	0	65	45	21	0	32	1.52
34550--34619	21	3.3	21	70	4	61	20	20	35	24	1.96
34550--34672	42	2.9	41	80	7	122	22	17	36	22	1.95
35093--35175	19	4.6	19	75	14	86	46	21	20	10	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35181--35258	20	3.9	20	93	0	138	6	14	28	51	1.66
35182--35278	40	2.4	40	84	3	133	7	16	24	51	1.69
35372--35747	94	4.1	94	93	3	613	47	18	12	22	1.81
37439--37529	19	4.7	19	85	5	128	48	18	20	12	1.80
37533--37586	19	2.8	20	88	2	67	9	16	22	51	1.72
37545--37641	20	4.9	20	78	6	99	11	17	18	52	1.74
38184--38273	20	4.4	20	84	2	126	20	20	18	41	1.91
38184--38273	41	2.2	40	88	2	126	20	20	18	41	1.91
38275--38319	21	2.1	21	87	0	63	37	17	26	17	1.93
38505--38576	3	24.0	3	94	0	126	33	2	0	63	1.08
51282--51318	18	2.1	18	100	0	74	43	16	18	21	1.88
57928--58032	53	2.0	53	90	3	167	24	16	19	40	1.91
64789--64818	14	2.1	14	100	0	60	46	0	6	46	1.29
64809--64840	15	2.0	17	88	11	50	56	0	0	43	0.99
71149--71276	54	2.6	47	83	13	168	42	10	30	15	1.81
81159--81187	14	2.0	15	93	6	51	41	13	17	27	1.87
83165--83302	66	2.1	66	100	0	276	28	13	26	32	1.93
85875--85919	23	1.9	24	86	4	65	31	11	2	55	1.47
94172--94216	12	3.9	12	77	11	58	17	22	15	44	1.86
94173--94225	22	2.4	22	90	0	79	16	20	15	47	1.83
94172--94237	34	1.9	33	85	11	89	18	22	13	45	1.84
94173--94237	22	3.0	22	86	0	67	18	21	13	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106059--106126	27	2.6	27	90	4	113	39	16	10	33	1.82
109821--109888	27	2.6	27	95	4	122	41	16	11	30	1.84
113087--113186	36	2.8	36	82	1	128	35	9	26	30	1.87
114282--114321	21	1.9	21	94	0	71	42	15	17	25	1.88
120032--120073	14	3.0	14	96	0	75	30	7	28	33	1.84
120830--120904	21	3.7	20	75	5	69	22	20	25	32	1.98
122206--122255	20	2.5	20	84	9	59	30	14	6	50	1.66
123420--123497	21	3.8	21	67	13	72	29	20	17	32	1.96
125525--125585	16	3.9	16	89	2	79	39	11	18	31	1.86
125685--125722	15	2.5	15	100	0	76	34	21	18	26	1.96
131249--131298	19	2.6	19	100	0	100	22	28	24	26	1.99
133981--134030	19	2.5	21	75	21	54	70	4	6	20	1.25
133981--134023	18	2.4	18	84	7	52	67	4	6	20	1.33
138661--138695	13	2.8	12	91	8	61	80	0	2	17	0.84
138661--138695	6	5.7	6	93	6	61	80	0	2	17	0.84
144162--144208	18	2.6	19	86	10	71	65	4	6	23	1.33
145491--145542	24	2.1	25	82	10	63	46	0	3	50	1.20
146423--146451	14	2.1	14	100	0	58	0	6	20	72	1.07
147972--148006	2	17.5	2	100	0	70	51	0	0	48	1.00
148202--148239	20	1.9	20	100	0	76	23	26	10	39	1.87
148631--149118	242	2.0	243	89	2	741	38	11	4	45	1.61
149720--150177	153	3.0	153	97	0	853	26	18	23	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
150768--151716	4	243.2	4	90	5	1489	24	0	25	49	1.53

Tables:   1

The End!